BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF03FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1504 1574 0.0
>3x_Contig1504
Length = 9288
Score = 1574 bits (794), Expect = 0.0
Identities = 854/870 (98%), Gaps = 4/870 (0%)
Strand = Plus / Plus
Query: 86 cctcaagaaatatgagatgtgttatatgaaaacgttcgatgtttcaaaatagccgaatat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7475 cctcaagaaatatgagatgtgttatatgaaaacgttcgatgtttcaaaatagccgaatat 7534
Query: 146 agtgctcttcagaaataagcattgcatcaaaaagaaaggagaaatataaaggcagaaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7535 agtgctcttcagaaataagcattgcatcaaaaagaaaggagaaatataaaggcagaaata 7594
Query: 206 aaacagaacatcacgatgagcagcagatcaggtacattcagttaccaatggatattgaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7595 aaacagaacatcacgatgagcagcagatcaggtacattcagttaccaatggatattgaat 7654
Query: 266 gaattaaaggcatggacggatctttaaaatagttttgtccctgtctccgagttgttgtgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7655 gaattaaaggcatggacggatctttaaaatagttttgtccctgtctccgagttgttgtgg 7714
Query: 326 ctcttaaactcttttctttctgtttatttactattcttactaaacaggaaatttccaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7715 ctcttaaactcttttctttctgtttatttactattcttactaaacaggaaatttccaaaa 7774
Query: 386 tccgtaacacgaattgacaaaatctagtgaaaaaaaaaaaactaaaaatagaacaggatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7775 tccgtaacacgaattgacaaaatctagtgaaaaaaaaaaaactaaaaatagaacaggatc 7834
Query: 446 ggagaaagagagaggtacatgagctgttgttctaacgtagcaatcttgaaccggttttct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7835 ggagaaagagagaggtacatgagctgttgttctaacgtagcaatcttgaaccggttttct 7894
Query: 506 actataactgtcatgatacctgctaaagcaaacgtaaatgccgaaacagttatggagtag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 actataactgtcatgatacctgctaaagcaaacgtaaatgccgaaacagttatggagtag 7954
Query: 566 gcattagaccacgggcgagattatcgctattatcaaagttttaggctaccattaaaaggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7955 gcattagaccacgggcgagattatcgctattatcaaagttttaggctaccattaaaaggt 8014
Query: 626 gcacgagaaaaagaaaacagacacacgcgtttaacatatggcactgccaccgccaatgtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 gcacgagaaaaagaaaacagacacacgcgtttaacatatggcactgccaccgccaatgtt 8074
Query: 686 taccaaacactgtaaggtgaaatcgagagtcatgatctgaagacggttttcgtcccacct 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 taccaaacactgtaaggtgaaatcgagagtcatgatctgaagacggttttcgtcccacct 8134
Query: 746 ttgtccttttaagtaanattagacctacaaagnaaaaaagcccgaaaacatctcacttaa 805
||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 8135 ttgtcctttaaagtaaaattagacctacaaagaaaaaaag-ccgaaaacatctcacttaa 8193
Query: 806 actaccgggccgtgacttctcttcaaggtagaaacattgcaaacactagcatgcttcatt 865
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 8194 actacc-ggccgtgac-tctcttcaaggtag-aacattgcaaacactagcatgcttcatt 8250
Query: 866 atttaagcttttgttnttggttttgaattgaanttgaatagtctaattaattacctcttc 925
||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||
Sbjct: 8251 atttaagcttttgtttttgtttttgaattgaattgaaatagtctaattaattacttcttc 8310
Query: 926 cagggtaattaattacctatttaatgcatt 955
||| || |||| ||||||||||||||||||
Sbjct: 8311 cagtgttattatttacctatttaatgcatt 8340
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,046
Number of Sequences: 1807
Number of extensions: 13046
Number of successful extensions: 155
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)