BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF03RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1635 0.0
>3x_Contig1791
Length = 39945
Score = 1635 bits (825), Expect = 0.0
Identities = 889/904 (98%), Gaps = 5/904 (0%)
Strand = Plus / Minus
Query: 43 gctttgaatgaattcaaagcaggaaaatgtaacttacttttagctactgatgtggcagcc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6322 gctttgaatgaattcaaagcaggaaaatgtaacttacttttagctactgatgtggcagcc 6263
Query: 103 agaggtttagacatcccaaacgtgaaaaccgttatcaatttgactttccctctaacagta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6262 agaggtttagacatcccaaacgtgaaaaccgttatcaatttgactttccctctaacagta 6203
Query: 163 gaagattacgttcacagaattggtagaaccggtcgtgctggtcaatacggtaccgcacac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6202 gaagattacgttcacagaattggtagaaccggtcgtgctggtcaatacggtaccgcacac 6143
Query: 223 acattgttcactgagcaagaaaagcatcttgcaggtgcccttgttaatgtcttaaatggt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6142 acattgttcactgagcaagaaaagcatcttgcaggtgcccttgttaatgtcttaaatggt 6083
Query: 283 gctggtcaacctgttcctgaggagctcaagaagttcggtactcacacaaagaagaaggaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6082 gctggtcaacctgttcctgaggagctcaagaagttcggtactcacacaaagaagaaggaa 6023
Query: 343 catagtgcgtacggtgcattcttcaaggatgtggacctatcaaagaaaccaaaaaagatt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6022 catagtgcgtacggtgcattcttcaaggatgtggacctatcaaagaaaccaaaaaagatt 5963
Query: 403 acatttgattaatttaaatccgttataaagacaattcttgtattttttagcaatcacccc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5962 acatttgattaatttaaatccgttataaagacaattcttgtattttttagcaatcacccc 5903
Query: 463 cattatgtacagtagttcattcaatacagagtaaataaaagtttacaattactcttgcat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5902 cattatgtacagtagttcattcaatacagagtaaataaaagtttacaattactcttgcat 5843
Query: 523 cgaagtttgtacaatgaatgttcacgataaaaattgaaattaaagacgtattaaatatgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842 cgaagtttgtacaatgaatgttcacgataaaaattgaaattaaagacgtattaaatatgc 5783
Query: 583 gatattcaaacaatgactttgaaaggcaacgaagaatggtgttgaaagggaaagcattaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5782 gatattcaaacaatgactttgaaaggcaacgaagaatggtgttgaaagggaaagcattaa 5723
Query: 643 agtataaaaggggatactctatcgaagatcttcttgtaccttcgccttttattttacagt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5722 agtataaaaggggatactctatcgaagatcttcttgtaccttcgccttttattttacagt 5663
Query: 703 attagtacaatggagcagtgcataatttttgaaatacaaactgaagtgat-aacanaagg 761
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 5662 attagtacaatggagcagtgcataatttttgaaatac-aactgaagtgataaacaaaagg 5604
Query: 762 aaattgagaatct-aaagaacatcgagtaccatctacggtgaagagtttgcatcagttga 820
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5603 aaattgagaatctaaaagaacatcgagtaccatctacggtgaagagtttgcatcagttga 5544
Query: 821 gtgtatggccgcatttcaccccagcagtctctaccaaag-tacaccccgccatattgaca 879
|||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 5543 gtgtattggcgcatttcaccccagcagtctctaccaaagttacacccagccatattgaca 5484
Query: 880 acgaagtcaggttccttttcgttatag-aatagcggcaggtatactggaaatctgcacaa 938
||||||||| ||||||||||||||||| ||||||| || ||||| |||||||||||||
Sbjct: 5483 acgaagtcatgttccttttcgttatagaaatagcgcaagtcatacttgaaatctgcacaa 5424
Query: 939 gcac 942
||||
Sbjct: 5423 gcac 5420
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7507
Number of Sequences: 1807
Number of extensions: 7507
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)