BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF04FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1616 0.0
>3x_Contig1673
Length = 13723
Score = 1616 bits (815), Expect = 0.0
Identities = 828/831 (99%), Gaps = 1/831 (0%)
Strand = Plus / Minus
Query: 86 cgaaaagaccctagaactacaccagtacaatttatagaattaattaactcatataatacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4709 cgaaaagaccctagaactacaccagtacaatttatagaattaattaactcatataatacc 4650
Query: 146 aattgcattggaataattaaaggccaatacctagcttgttaggctatgactgggtactgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4649 aattgcattggaataattaaaggccaatacctagcttgttaggctatgactgggtactgt 4590
Query: 206 tgctgtgacaggaatctctgtaaaagctgtcaatggatgccagttggatcatgatgtacg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4589 tgctgtgacaggaatctctgtaaaagctgtcaatggatgccagttggatcatgatgtacg 4530
Query: 266 gttttgatgtttttcataatgaaaacacaggttttggcgcaggttgatcaataaaggctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4529 gttttgatgtttttcataatgaaaacacaggttttggcgcaggttgatcaataaaggctt 4470
Query: 326 cttacattactgctgaatgacaaactgatgggcagtgagagagtacaaggtctgcaaact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4469 cttacattactgctgaatgacaaactgatgggcagtgagagagtacaaggtctgcaaact 4410
Query: 386 cttttatagtgggctaaaaataagtaaacaatggtagagctgctaaaagagaattttttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4409 cttttatagtgggctaaaaataagtaaacaatggtagagctgctaaaagagaattttttt 4350
Query: 446 cagaacttactaactgttttaaaagggtatgtgaatataaaaacaacacatttttcattc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4349 cagaacttactaactgttttaaaagggtatgtgaatataaaaacaacacatttttcattc 4290
Query: 506 gaattatgttgcattcgcacatgtttttgtctagaatcggtgataataataaattaaaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4289 gaattatgttgcattcgcacatgtttttgtctagaatcggtgataataataaattaaaga 4230
Query: 566 ccagcatacgatgacctggggttcctcaagtctttattttatgttttcagtgttagattt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4229 ccagcatacgatgacctggggttcctcaagtctttattttatgttttcagtgttagattt 4170
Query: 626 gccaaagcatgattttattttacaatcaaatactaacagtattaattttattttgattta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 gccaaagcatgattttattttacaatcaaatactaacagtattaattttattttgattta 4110
Query: 686 attagtgcatcttcgaaatgcagagctttagatgaaaggtttcctaaagaattctacgag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4109 attagtgcatcttcgaaatgcagagctttagatgaaaggtttcctaaagaattctacgag 4050
Query: 746 cctgatccaacacacatatacgattcttacgtgaagtttctaagggccaagtttgatgaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4049 cctgatccaacacacatatacgattcttacgtgaagtttctaagggccaagtttgatgaa 3990
Query: 806 aatccagatatcaaaatagcagaagatattgattcaatttccatatctgataaatttgct 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3989 aatccagatatcaaaatagcagaagatattgattcaatttccatatctgataaatttgct 3930
Query: 866 agtggagattaccagaagcatgaagattttgtttatc-gaattaccatgat 915
|||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 3929 agtggagattaccagaagcatgaagattctgtttatcggatttaccatgat 3879
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7419
Number of Sequences: 1807
Number of extensions: 7419
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)