BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF04RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1610 0.0
>3x_Contig1464
Length = 11693
Score = 1610 bits (812), Expect = 0.0
Identities = 848/858 (98%), Gaps = 2/858 (0%)
Strand = Plus / Plus
Query: 43 gcttgttgaatacggtgttaaaaatgaaactgagatctcggtcttcaatcaagaagaata 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6373 gcttgttgaatacggtgttaaaaatgaaactgagatctcggtcttcaatcaagaagaata 6432
Query: 103 cgtctctttcaaagcaaacccagaagagaaatggctatagagtcgcactgcataaaagtt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6433 cgtctctttcaaagcaaacccagaagagaaatggctatagagtcgcactgcataaaagtt 6492
Query: 163 atcgtcaaatcgataatatttcaaatttaatgtaagcaaaaattcatatgacaaaataac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6493 atcgtcaaatcgataatatttcaaatttaatgtaagcaaaaattcatatgacaaaataac 6552
Query: 223 agcaatatttcttatttctatgtagttatacatatgattgctcctttaaaaccgaaaaat 282
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6553 agcaatatgtcttatttctatgtagttatacatatgattgctcctttaaaaccgaaaaat 6612
Query: 283 gttagcgtcggtatgctattgttgtatttcctttagtccaatagatggttgatcaattca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6613 gttagcgtcggtatgctattgttgtatttcctttagtccaatagatggttgatcaattca 6672
Query: 343 caggcaaactcgacgttagcaactccatagggtgtcgcactatctaagcctttccgggcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6673 caggcaaactcgacgttagcaactccatagggtgtcgcactatctaagcctttccgggcc 6732
Query: 403 acaatcccatcatgagcatttagtgttttaatatatacaggtacccgtatccaagttaat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 acaatcccatcatgagcatttagtgttttaatatatacaggtacccgtatccaagttaat 6792
Query: 463 ttagttaaattttgataaattgtagctctactttcatcgaaaggaagtttcggaaacttt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6793 ttagttaaattttgataaattgtagctctactttcatcgaaaggaagtttcggaaacttt 6852
Query: 523 gtatgtttccactcttttgaatgagaacgaatgaattgtttccatacgtcattcatttgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6853 gtatgtttccactcttttgaatgagaacgaatgaattgtttccatacgtcattcatttgc 6912
Query: 583 gcagaatcattagtgagggtgtgatataaactattattctcaatggaccaatccgatcct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6913 gcagaatcattagtgagggtgtgatataaactattattctcaatggaccaatccgatcct 6972
Query: 643 tggtccttaccgctatcttgttcatcattaatagcatcacctattacatttctaatggat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6973 tggtccttaccgctatcttgttcatcattaatagcatcacctattacatttctaatggat 7032
Query: 703 gacatgatagtattgaaaacaccattttctcccgattctagcttccaatgtccttttctc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7033 gacatgatagtattgaaaacaccattttctcccgattctagcttccaatgtccttttctc 7092
Query: 763 aagagagaatggtgatgataagtagtaatataactgtagcatgttccaatgacattgact 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7093 aagagagaatggtgatgataagtagtaatataactgtagcatgttccaatgacattgact 7152
Query: 823 gtgaacaccagtgggaaagaaaatgtcattaacgccatnnatagc-atattcttgagacc 881
||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct: 7153 gtgaacaccagtgggaagaaaaatgtcattaacgccataataagcaatattcttgagaac 7212
Query: 882 cgttc-tttaatgtgaca 898
||||| ||||||||||||
Sbjct: 7213 cgttcttttaatgtgaca 7230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7456
Number of Sequences: 1807
Number of extensions: 7456
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)