BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF09FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig276 591 e-168
>3x_Contig276
Length = 1075
Score = 591 bits (298), Expect = e-168
Identities = 337/345 (97%), Gaps = 4/345 (1%)
Strand = Plus / Minus
Query: 595 tatatcacgtgataaacgccacagaaacaaccgtggcatgtctcttgtttacggttgatg 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1067 tatatcacgtgataaacgccacagaaacacccgtggcatgtctcttgtttacggttgatg 1008
Query: 655 aaaattttcacgagatccgggtaacaagtaataacttcgcagttattactacactgactg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 aaaattttcacgagatccgggtaacaagtaataacttcgcagttattactacactgactg 948
Query: 715 gaagtagagaggatgagagatgtggtaaaacaagttccaccctcgcaacttcgtatcgta 774
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 947 gaagtagagaggatgagagatgtggtaaaacaagttccaccctcgcaac-tcgtatcgta 889
Query: 775 tatcacgttatatcagttcttattactgagatgatttttgttccctgctagtgtc-aaaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 888 tatcacgttatatcagttcttattactgagatgatttttgttccctgctagtgtcaaaaa 829
Query: 834 aaactgcgcaacggctactgggctgcctttatatgtactgacagtttcactgcccttgac 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaactgcgcaacggctactgggctgcctttatatgtactgacagtttcactgcccttgac 769
Query: 894 ggnattactgtatatat-atgttaaata-ctgccctgaagtgctc 936
|| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct: 768 ggtattactgtatatataatgttaaatatctgcctggaagtgctc 724
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6237
Number of Sequences: 1807
Number of extensions: 6237
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)