BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig989 1538 0.0
>3x_Contig989
Length = 4314
Score = 1538 bits (776), Expect = 0.0
Identities = 794/799 (99%), Gaps = 1/799 (0%)
Strand = Plus / Minus
Query: 93 ctacaagtatgatattccgttgctattgtgtctcaatgcactaattaagaacgctgctat 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 ctacaagtatgatattccgttgctattgtgtctcaatgcactaattaagaacgctgctat 4255
Query: 153 tattggcgtttgaaagtgaagtacctcgtatatctccagctgaatgcgtcgagcaatgtc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 tattggcgtttgaaagtgaagtacctcgtatatctccagctgaatgcgtcgagcaatgtc 4195
Query: 213 aagagttgtttagaaaagttcaagagttatgccgcaatcacaaactgtt-cagcgaatct 271
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4194 aagagttgcaaagaaaagttcaagagttatgccgcaatcacaaactgttacagcgaatct 4135
Query: 272 cagggtccaaggccatcgataatctttcaaagattcagttatcagatgagcaggtacaat 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 cagggtccaaggccatcgataatctttcaaagattcagttatcagatgagcaggtacaat 4075
Query: 332 tgaaggccggtgtgtttgatttcatcaagaagaagttgtttaattacgatggaaaacctt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 tgaaggccggtgtgtttgatttcatcaagaagaagttgtttaattacgatggaaaacctt 4015
Query: 392 caatgtacgttatcgaaggtgatgcaggtacagggaaatcagtaattttgaacgcgttgt 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 caatgtacgttatcgaaggtgatgcaggtacagggaaatcagtaattttgaacgcgttgt 3955
Query: 452 tcaatgatttgcagaaacaatccatgcacgggtctgccaatgacattttgaaaggtaccc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 tcaatgatttgcagaaacaatccatgcacgggtctgccaatgacattttgaaaggtaccc 3895
Query: 512 ataactacttggtggtgaaccaccccgaaatgttgaaattataccatcagattagtagat 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 ataactacttggtggtgaaccaccccgaaatgttgaaattataccatcagattagtagat 3835
Query: 572 ctttcccatatattaaaaaatcgtcattggaaagacccacttctgtaataaacagtttga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3834 ctttcccatatattaaaaaatcgtcattggaaagacccacttctgtaataaacagtttga 3775
Query: 632 acaagaccaattcacaatgcgacgtgattattgtggatgaagcacatttgttagctacct 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3774 acaagaccaattcacaatgcgacgtgattattgtggatgaagcacatttgttagctacct 3715
Query: 692 ctaaggatgcattcaaaaagttctacggngataatcatttaaaagatttgatggaactgt 751
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3714 ctaaggatgcattcaaaaagttctacggggataatcatttaaaagatttgatggaactgt 3655
Query: 752 ctaaagtgttgattgtagtgtttgatgctaaacaatctttaagaatggggtcgtattggg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3654 ctaaagtgttgattgtagtgtttgatgctaaacaatctttaagaatggggtcgtattggg 3595
Query: 812 acgatgaacggggcaatggctcaaatttgcagtcgttttacgactcattgcctgttgaga 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3594 acgatgaacggggcaatggctcaaatttgcagtcgttttacgactcattgcctgttgaga 3535
Query: 872 ataggaaatggtatacgct 890
|||||||||||||||||||
Sbjct: 3534 ataggaaatggtatacgct 3516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7302
Number of Sequences: 1807
Number of extensions: 7302
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)