BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZF10RM1.SCF screened BAC_end
         (911 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1346                                                        1643   0.0  

>3x_Contig1346 
          Length = 6154

 Score = 1643 bits (829), Expect = 0.0
 Identities = 859/865 (99%), Gaps = 3/865 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   ctaaatttgttggaccatcaatca-ttctagcgtacttgccatacaactcagaaagagac 106
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6049 ctaaatttgttggaccgtcaatcaattctagcgtacttgccatacaactcagaaagagac 5990

                                                                        
Query: 107  actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccttta 166
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5989 actccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccgtta 5930

                                                                        
Query: 167  tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 tacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctctgtt 5870

                                                                        
Query: 227  atcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctcaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 atcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagctcaa 5810

                                                                        
Query: 287  aagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 aagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattgaaa 5750

                                                                        
Query: 347  caagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcct 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 caagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccctcct 5690

                                                                        
Query: 407  cttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattgggt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 cttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattgggt 5630

                                                                        
Query: 467  acaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttcta 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5629 acaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgttcta 5570

                                                                        
Query: 527  gaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggtgaa 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5569 gaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggtgaa 5510

                                                                        
Query: 587  ttccctcaagatggtaaggcattttgggatgctctgaagtcttctactgacctcgattta 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 ttccctcaagatggtaaggcattttgggatgctctgaagtcttctactgacctcgattta 5450

                                                                        
Query: 647  gcttctttgaatttctccgtgtttggtttaggtgactctgcatactggccacgtaaggaa 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 gcttctttgaatttctccgtgtttggtttaggtgactctgcatactggccacgtaaggaa 5390

                                                                        
Query: 707  gacgcccattactacaacaaacccgctaaggatttgttcaagagattagaattgctttct 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5389 gacgcccattactacaacaaacccgctaaggatttgttcaagagattagaattgctttct 5330

                                                                        
Query: 767  ggtcaagaactagtttctttgggattgggtgatgaccaggatgccgatggttatcaaaca 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 ggtcaagaactagtttctttgggattgggtgatgaccaggatgccgatggttatcaaaca 5270

                                                                        
Query: 827  ggctatgctgtgtgggaagctcagctctgggagaaacttnggtgttttc-gtgcaactgt 885
            ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct: 5269 ggctatgctgtgtgggaagctcagctctgggagaaactt-ggtgtttccggtgcaactgt 5211

                                     
Query: 886  ccctgatgaaccaaagccgatcacc 910
            |||||||||||||||||||||||||
Sbjct: 5210 ccctgatgaaccaaagccgatcacc 5186


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5801
Number of Sequences: 1807
Number of extensions: 5801
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)