BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZF12FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1495 165 2e-40
>3x_Contig1495
Length = 10008
Score = 165 bits (83), Expect = 2e-40
Identities = 152/170 (89%), Gaps = 5/170 (2%)
Strand = Plus / Plus
Query: 776 tttatgatgctgtcaatgttgtgttgaaatgg--acagtagtagctaactgcatcttagc 833
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgatgctgtcaatgttgtgttgaaatgtgtatattagtagctaactgcatcttagc 60
Query: 834 atctctatgttttgatgcttcttctttttctggatgtggatgcaaatcgaacacaaaagg 893
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 61 atctctatgttt-gatgcttcttctttt-ctggatgtggatgcaaatcgaacacaaaaag 118
Query: 894 acacaagttcaattcagccatttggattggaattttcaattcaatctgct 943
|||||| || | ||| || ||| |||||||| | ||||||||||||||
Sbjct: 119 acacaaagtccaatcaagcaattgaattggaatat-caattcaatctgct 167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8181
Number of Sequences: 1807
Number of extensions: 8181
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)