BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZF12RM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1346                                                        1594   0.0  

>3x_Contig1346 
          Length = 6154

 Score = 1594 bits (804), Expect = 0.0
 Identities = 882/905 (97%), Gaps = 3/905 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   cttctaaatttgttggaccattattca-ttctagcgtacttgccatacaactcagaaaga 101
            ||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||
Sbjct: 6052 cttctaaatttgttggaccgtcaatcaattctagcgtacttgccatacaactcagaaaga 5993

                                                                        
Query: 102  gacactccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggcct 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5992 gacactccactagaagttttaaaagaaaccaaaattggtgtcgaaagtggttactggccg 5933

                                                                        
Query: 162  ttatacatgtttaacccttacgaagaacgcgacgaccaagttttcaaattggtcncttcn 221
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| | | || 
Sbjct: 5932 ttatacaggtttaacccttacgaagaacgcgacgaccaagttttcaaattggactcctct 5873

                                                                        
Query: 222  gttatcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagct 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5872 gttatcaaacaacaactgaaggactttttagaccgagagaataagctcactcttctagct 5813

                                                                        
Query: 282  caaaagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattg 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 caaaagtccccagagcttgccagaaatttgaagcattccgcctcagatgcgattcaattg 5753

                                                                        
Query: 342  aaacaagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccct 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 aaacaagacagaagggctaaagcagcattcgatcaactcttagaaggtctctctggccct 5693

                                                                        
Query: 402  cctcttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattg 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 cctcttcacatttatcatgcttctgacggtggcaatgcagctaatttagcaaaaagattg 5633

                                                                        
Query: 462  ggtacaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgtt 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 ggtacaagggcatctgctagaggtctaaaaactattgtactatcaatggaagacattgtt 5573

                                                                        
Query: 522  ctagaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggt 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5572 ctagaagagttaccaggtgaagagaatgttgtatttataacgtcaactgctggtcaaggt 5513

                                                                        
Query: 582  gaattccctcaagatggtaaggcattttgggatgctctgaagtcttctactgacctcgat 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 gaattccctcaagatggtaaggcattttgggatgctctgaagtcttctactgacctcgat 5453

                                                                        
Query: 642  ttagcttctttgaatttctccgtgtttggtttaggtgactctgcatactggccacgtaag 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 ttagcttctttgaatttctccgtgtttggtttaggtgactctgcatactggccacgtaag 5393

                                                                        
Query: 702  gaagacgcccattactacaacanacccgcttaggatttgttcaagagattagaattgctt 761
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 5392 gaagacgcccattactacaacaaacccgctaaggatttgttcaagagattagaattgctt 5333

                                                                        
Query: 762  tctggtcaagaactagtttctttgggattgggtgatgaccaggatgccgatgtttatcaa 821
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5332 tctggtcaagaactagtttctttgggattgggtgatgaccaggatgccgatggttatcaa 5273

                                                                        
Query: 822  acaggctatgctgtgtgggaagctcagctctgggagaaacttgttgtttccgttgcaact 881
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 5272 acaggctatgctgtgtgggaagctcagctctgggagaaacttggtgtttccggtgcaact 5213

                                                                        
Query: 882  gtccttgatg-acccaagccgatcaccattgaagatat-taaattgctttcaaattcctc 939
            |||| ||||| ||| ||||||||||||| |||||||||  ||||||||| ||| ||||||
Sbjct: 5212 gtccctgatgaaccaaagccgatcaccaatgaagatatcaaaattgcttccaatttcctc 5153

                 
Query: 940  agaga 944
            |||||
Sbjct: 5152 agaga 5148


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6627
Number of Sequences: 1807
Number of extensions: 6627
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)