BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG02FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1675 1629 0.0
>3x_Contig1675
Length = 13954
Score = 1629 bits (822), Expect = 0.0
Identities = 831/835 (99%)
Strand = Plus / Minus
Query: 87 actccagaagcacgcgttgaatgcatgaaacttccccagagatttgcatattcaaagtat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10355 actccagaagcacgcgttgaatgcatgaaacttccccagagatttgcatattcaaagtat 10296
Query: 147 caaaatattacttcacgtgacttctaaatacaaaaacaatggaaatcttaatgaaaatgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10295 caaaatattacttcacgtgacttctaaatacaaaaacaatggaaatcttaatgaaaatgc 10236
Query: 207 ttgataccgcatatcatcatcgctagagttgaataaattgatgatatagagctgtgactc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10235 ttgataccgcatatcatcatcgctagagttgaataaattgatgatatagagctgtgactc 10176
Query: 267 cgcgtaacgtaccagcaacccattaaacatgcaggttaaccatctattaaggcaagctgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10175 cgcgtaacgtaccagcaacccattaaacatgcaggttaaccatctattaaggcaagctgt 10116
Query: 327 caaacagaccactagagcgggacggctaggttcgaggaaacctcacaaaccgctcttgcc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10115 caaacagaccactagagcgggacggctaggttcgaggaaacctcacaaaccgctcttgcc 10056
Query: 387 tccgttacaattgtaccgtagaatcctcagagaacacagaaacttaccaacgatgcagag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10055 tccgttacaattgtaccgtagaatcctcagagaacacagaaacttaccaacgatgcagag 9996
Query: 447 agagttgggagatcaatatgtcaagaatgaattcaagttgcataagagtactgacaatcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9995 agagttgggagatcaatatgtcaagaatgaattcaagttgcataagagtactgacaatcc 9936
Query: 507 cttatacattgttggattcttagcctcatggcaggattatctgcatatgattacaagagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9935 cttatacattgttggattcttagcctcatggcaggattatctgcatatgattacaagagg 9876
Query: 567 tgaatgggaagaaggaactttatccactgacctgcttgaaaagatgtcaccagaacaagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9875 tgaatgggaagaaggaactttatccactgacctgcttgaaaagatgtcaccagaacaagt 9816
Query: 627 tacccagttgtacgaattgatgaaagaagctgaacagctgaaatcaggtggtgaatgatc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9815 tacccagttgtacgaattgatgaaagaagctgaacagctgaaatcaggtggtgaatgatc 9756
Query: 687 ttcggaaggttgtaagacagacatttcccaaatattatatctttcctccaaattctctca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9755 ttcggaaggttgtaagacagacatttcccaaatattatatctttcctccaaattctctca 9696
Query: 747 agtagtgggtgaggagaaaggtttatatactcaactttntgttgcacgtgacttcaaaag 806
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9695 agtagtgggtgaggagaagggtttatatactcaactttttgttgcacgtgacttcaaaag 9636
Query: 807 actttcgtcttatattgaaaattttcttctcgacactatttagtagttgtgtaatgaaaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9635 actttcgtcttatattgaaaattttcttctcgacactatttagtagttgtgtaatgaaaa 9576
Query: 867 ctatgatntaaagntagtaaagtgatgagaagagatgagctgaagaaattcgctt 921
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9575 ctatgatttaaagttagtaaagtgatgagaagagatgagctgaagaaattcgctt 9521
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6691
Number of Sequences: 1807
Number of extensions: 6691
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)