BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1560 1675 0.0
3x_Contig32 420 e-117
>3x_Contig1560
Length = 9209
Score = 1675 bits (845), Expect = 0.0
Identities = 866/872 (99%), Gaps = 1/872 (0%)
Strand = Plus / Minus
Query: 44 gcttgcaactacaacgaaatattgtttatagtctgttgataagcagaaggttgaatcaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4665 gcttgcaactacaacgaaatattgtttatagtctgttgataagcagaaggttgaatcaat 4606
Query: 104 tacaatttcggtcacatcatgttgaatttcagatataattctctcataaataaaagcaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4605 tacaatttcggtcacatcatgttgaatttcagatataattctctcataaataaaagcaat 4546
Query: 164 aggtttagctttttgtaaactaatgttcaaatcagctgaacagttgtccacngggtgaat 223
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 4545 aggtttagctttttgtaaactaatgttcaaatcagctgaacagttgtccactggaagaag 4486
Query: 224 tgccacatctccagtattttgaaaacgctttagaattttagaagcgcttcttttcgaatc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4485 tgccacatctccagtattttgaaaacgctttagaattttagaagcgcttcttttcgaatc 4426
Query: 284 tgggtccaaattccactgagactctgaaatctctttccatattttacggactatcgcctt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4425 tgggtccaaattccactgagactctgaaatctctttccatattttacggactatcgcctt 4366
Query: 344 tgcatcaaaactcttagtaaactctaaatatactggtgttcgtttcaaacattcaaaaca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4365 tgcatcaaaactcttagtaaactctaaatatactggtgttcgtttcaaacattcaaaaca 4306
Query: 404 ttctcttgcggtaaagcataggttagttgaaatgtactgtctaagggaagctggaatgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4305 ttctcttgcggtaaagcataggttagttgaaatgtactgtctaagggaagctggaatgat 4246
Query: 464 tgttatgggtaaggtttcgtgttttgacttgtgacaaaaacagatctttatcgtgttaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4245 tgttatgggtaaggtttcgtgttttgacttgtgacaaaaacagatctttatcgtgttaag 4186
Query: 524 cttaacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcagg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4185 cttaacattaaaatgaactgaaaaagaagagaagcaattgaattgttttaaattatcagg 4126
Query: 584 atcgtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgttt 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4125 atcgtgatgcttttttacattacatctaggtttgagtatttggtggcacttatcttgttt 4066
Query: 644 gcagtgacactttaaaataatggtatttacacggtatcctgtccagccacgaacaaaaat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4065 gcagtgacactttaaaataatggtatttacacggtatcctgtccagccacgaacaaaaat 4006
Query: 704 gtaaccggtaccttcccttataagttctagaagtctttcgcggatgtttttgcactcctc 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4005 gtaaccggtaccttcccttataagttctagaagtctttcgcggatgtttttgcactcctc 3946
Query: 764 tatcaattgttcatttttcaaagtgatgacgtgcatttgtttttcggattcaatctttgt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3945 tatcaattgttcatttttcaaagtgatgacgtgcatttgtttttcggattcaatctttgt 3886
Query: 824 ttgattattactttgatattttctatctaaaaaactgattgtcttggtgtcaaatttaca 883
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3885 ttgattattactttgatattttctatctaaaaaactgattgtcttggtgtcaattttaca 3826
Query: 884 atttttgtcaccgtcaat-aaaatattatctg 914
|||||||||||||||||| |||||||||||||
Sbjct: 3825 atttttgtcaccgtcaataaaaatattatctg 3794
>3x_Contig32
Length = 894
Score = 420 bits (212), Expect = e-117
Identities = 371/420 (88%), Gaps = 3/420 (0%)
Strand = Plus / Minus
Query: 497 acaaaaacagatctttatcgtgttaagcttaacattaaaatgaactgaaaaagaagagaa 556
||||||||| ||||||||| | |||| |||||||||||||| |||| ||||| || | ||
Sbjct: 575 acaaaaacatatctttatctttttaatcttaacattaaaattaacttaaaaataatataa 516
Query: 557 gcaattgaattgttttaaattatcaggatcgtgatgcttttttacattacatctaggttt 616
||||| |||| |||||||| | || ||| | || |||||||||||||||||| |||
Sbjct: 515 tcaatttaatttttttaaataaccattatctttatttttttttacattacatctattttt 456
Query: 617 gagtatttggtggcacttatcttgtttgcagtgacactttaaaataatggtatttacacg 676
| |||| | |||| | ||| ||| || | ||| ||||||||||| |||||||||
Sbjct: 455 tataattttttttcactaaactttttttcatttacattttaaaataattttatttacact 396
Query: 677 gtatcctgtccagccacgaacaaaaatgtaaccggtaccttcc-cttataagttctagaa 735
||||| |||| |||| ||||||||| |||||| |||||||| ||||||||||||||||
Sbjct: 395 taatcctttccatccactaacaaaaatttaaccg-taccttccgcttataagttctagaa 337
Query: 736 gtctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtctttcgcggatgtttttgcactcctctatcaattgttcatttttcaaagtgatgacgt 277
Query: 796 gcatttgtttttcggattcaatctttgtttgattattactttgatattttctatctaaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gcatttgtttttcggattcaatctttgtttgattattactttgatattttctatctaaaa 217
Query: 856 aactgattgtcttggtgtcaaatttacaatttttgtcaccgtcaat-aaaatattatctg 914
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 216 aactgattgtcttggtgtcaattttacaatttttgtcaccgtcaataaaaatattatctg 157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8215
Number of Sequences: 1807
Number of extensions: 8215
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)