BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZG04FM1.SCF screened BAC_end
         (898 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig361                                                          490   e-138
3x_Contig1219                                                         369   e-102

>3x_Contig361 
          Length = 1383

 Score =  490 bits (247), Expect = e-138
 Identities = 281/290 (96%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                        
Query: 608  caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 caccatttcaactggatatccttcgtaaacttgtttgcgtccttgacggttctgtcatat 1311

                                                                        
Query: 668  gcttcataaaacgcgacagcctcggaagagtaatttgaaagatcccgttcactcttagca 727
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 gcttcataaaacgcgaca-cctcggaagagtaatttgaaagatcccgttcactcttagca 1252

                                                                        
Query: 728  ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 ctgctaggcgggttatccactttgggtatgctgacttgctgcgccggtggtggttgtcgt 1192

                                                                        
Query: 788  gatactggcgtcgttaccgttgactgggaggcttgtcttgnatctttctcatacatttgg 847
            ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||
Sbjct: 1191 gatactggcgtcgttaccgttgactgggagctttgtcttgtatctttctcatacatttgg 1132

                                                              
Query: 848  gatggaatattcgtatcttgcacatgattctgggggcagatcatcaaccg 897
             |||||||||||||||||   |||||||||| ||||||||||||||||||
Sbjct: 1131 tatggaatattcgtatctgcaacatgattct-ggggcagatcatcaaccg 1083


>3x_Contig1219 
          Length = 5018

 Score =  369 bits (186), Expect = e-102
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                        
Query: 88   tacagggtctcttttgataacgatttcaccagatttcgttctcagtcctttcaaatagaa 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4833 tacagggtctcttttgataacgatttcaccagatttcgttctcagtcctttcaaatagaa 4892

                                                                        
Query: 148  catcccgagcttgtacatggatacagaatgtccattggtcaaagctgccatttcatagta 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4893 catcccgagcttgtacatggatacagaatgtccattggtcaaagctgccatttcatagta 4952

                                                                        
Query: 208  cttctgtgaaatctttaaagcttcgtattcactcacagttgtgtaatctactccacgtcc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4953 cttctgtgaaatctttaaagcttcgtattcactcacagttgtgtaatctactccacgtcc 5012

                  
Query: 268  gtactc 273
            ||||||
Sbjct: 5013 gtactc 5018


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4406
Number of Sequences: 1807
Number of extensions: 4406
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 2
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)