BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG08RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1390 1649 0.0
>3x_Contig1390
Length = 7609
Score = 1649 bits (832), Expect = 0.0
Identities = 864/873 (98%), Gaps = 2/873 (0%)
Strand = Plus / Plus
Query: 40 gcttgctacaacgtcgacgtcatgtttggtttattcaatcggaatcctgaagctggtgct 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 gcttgctacaacgtcgacgtcatgtttggtttattcaatcggaatcctgaagctggtgct 1810
Query: 100 cctggtcaaccgcaaaatgtgtttctgacccaaaagtttattgcctactcccttatgtca 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 cctggtcaaccgcaaaatgtgtttctgacccaaaagtttattgcctactcccttatgtca 1870
Query: 160 tatacggcagccgcatggtctttacattattgtgtaacaacatctttctcttatttttat 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1871 tatacggcagccgcatggtctttacattattgtgtaacaacatctttctcttatttgcat 1930
Query: 220 gcaatgacgaagattaccgagggtatccatgccatgatatgggggaatctctttctatta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 gcaatgacgaagattaccgagggtatccatgccatgatatgggggaatctctttctatta 1990
Query: 280 aacagcgtcttaatactaaagggtgtcattcacatgctatttggacagttacggttgatt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 aacagcgtcttaatactaaagggtgtcattcacatgctatttggacagttacggttgatt 2050
Query: 340 gaatatgaacatattctcgaacggatatcgtataccgtaataactttgttattatcgtgc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 gaatatgaacatattctcgaacggatatcgtataccgtaataactttgttattatcgtgc 2110
Query: 400 tcgtcgatgaatgggctcatctcagttatgcagatacactgtgtgctttttgtttgctgt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2111 tcgtcgatgaatgggctcatctcagttatgcagatacactgtgtgctttttgtttgctgt 2170
Query: 460 agaacgttacactggatcctcaaggacagaatggaagtcactttccaggcaaatgacatg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 agaacgttacactggatcctcaaggacagaatggaagtcactttccaggcaaatgacatg 2230
Query: 520 cgccttactttgaaagatatattactttcgaggttcatgttcaatttattagtcctaaca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 cgccttactttgaaagatatattactttcgaggttcatgttcaatttattagtcctaaca 2290
Query: 580 gccgtagatggtatcatagtggcatattacgttaataagatcttgtacaaatctaacatt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 gccgtagatggtatcatagtggcatattacgttaataagatcttgtacaaatctaacatt 2350
Query: 640 gacgttacatataccctgttcattataagccaatatgctatacttgggacagatttactg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 gacgttacatataccctgttcattataagccaatatgctatacttgggacagatttactg 2410
Query: 700 caggttatcttacgtactgggctcaatttgtttgagctttctactattcaaaacagagca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 caggttatcttacgtactgggctcaatttgtttgagctttctactattcaaaacagagca 2470
Query: 760 agaattcgtcgcaatgcggatcatcacgtcgatgagcctgttatcaatcacgaagaaagg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 agaattcgtcgcaatgcggatcatcacgtcgatgagcctgttatcaatcacgaagaaagg 2530
Query: 820 ccanatgccgttgccattgaagaagatgaggatgaggatgangaaaaatgca-gattgga 878
||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 2531 ccaaatgccgttgccattgaagaagatgaggatgaggatgagg-aaaatgcaggattgga 2589
Query: 879 aggggaattcattnatgagaaaataattgatgt 911
|||| |||||||| |||||||| ||||||||||
Sbjct: 2590 agggaaattcatttatgagaaattaattgatgt 2622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6111
Number of Sequences: 1807
Number of extensions: 6111
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)