BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG09FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1584 0.0
>3x_Contig1668
Length = 13429
Score = 1584 bits (799), Expect = 0.0
Identities = 848/862 (98%), Gaps = 2/862 (0%)
Strand = Plus / Plus
Query: 89 attcgaatacatgaaaaaatggcaagatcttgatcttctgatcaatagcaaattcagcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2864 attcgaatacatgaaaaaatggcaagatcttgatcttctgatcaatagcaaattcagcaa 2923
Query: 149 cgatgcgctaaagaagcaactgcgacacaatgtgatcaatctggatgaaaaatcttctca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2924 cgatgcgctaaagaagcaactgcgacacaatgtgatcaatctggatgaaaaatcttctca 2983
Query: 209 tatggttaacgaagtgcctgttactgacgaatctcttgacctgtttttggaacaatatgt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2984 tatggttaacgaagtgcctgttactgacgaatctcttgacctgtttttggaacaatatgt 3043
Query: 269 taatgagcgcacagaatatcacctacagcgagaaaaattggcaacatgggaacaacagga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3044 taatgagcgcacagaatatcacctacagcgagaaaaattggcaacatgggaacaacagga 3103
Query: 329 tactttgagattaccatgagtgtagtgcattattgattattgatgttattatgtaaaata 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3104 tactttgagattaccatgagtgtagtgcattattgattattgatgttattatgtaaaata 3163
Query: 389 catagattttgatttttaagagtgtattaagcattaaatcgtgtttaaaatgactgctat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3164 catagattttgatttttaagagtgtattaagcattaaatcgtgtttaaaatgactgctat 3223
Query: 449 cttatgccattccaaatgcaaacttgaccatcccagccagtcgaagcaacaaagcctggc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3224 cttatgccattccaaatgcaaacttgaccatcccagccagtcgaagcaacaaagcctggc 3283
Query: 509 gtaccccataaactccaatctgctccaaaaacgaactcggaatgctccataaatatgaat 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3284 gtaccccataaactccaatctgctccaaaaacgaactcggaatgctccataaatatgaat 3343
Query: 569 ctacaaccatgggctggatcaatgctattcgttttcccggtcagcccatgaccatcatca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3344 ctacaaccatgggctggatcaatgctattcgttttcccggtcagcccatgaccatcatca 3403
Query: 629 cttagatctgtccaaactctgcacgtcatatcatatgatgttgaaagtaacatgttacta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3404 cttagatctgtccaaactctgcacgtcatatcatatgatgttgaaagtaacatgttacta 3463
Query: 689 tgatgaggtgaccatgtcacttttctaacggctaattcatggccttgaatttcattaatg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3464 tgatgaggtgaccatgtcacttttctaacggctaattcatggccttgaatttcattaatg 3523
Query: 749 ttgattgggtgatgtccttgtgacagcatttttctgcacattctcaaatnccatactttt 808
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3524 ttgattggttgatgtccttgtgacagcatttttctgcacattctcaaatcccatactttt 3583
Query: 809 atcatcttatccactccacccgtagcaattatatgaagtctatatttgttaaaatcacag 868
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3584 atcatcttatccactccacccgtagcaattatatgaggtctatatttgttaaaatcacag 3643
Query: 869 ttcagggcttcaaatcccccatgggcaaggaattgattgttgcgtaaaccctttatta-g 927
||| ||||||||||||||||||| |||| |||||| ||||||| ||||| |||||| |
Sbjct: 3644 gtcaaggcttcaaatcccccatggccaagaaattga-tgttgcggtaacccattattagg 3702
Query: 928 cacccttaaatcgtaaaacgaa 949
|||||||| |||||||| ||||
Sbjct: 3703 cacccttagatcgtaaagcgaa 3724
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6022
Number of Sequences: 1807
Number of extensions: 6022
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)