BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG09RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 965 0.0
>3x_Contig1264
Length = 6524
Score = 965 bits (487), Expect = 0.0
Identities = 507/511 (99%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 43 gcttggctctgagatctgactcatatctttctctttacc-taagtgaagtcatcaagacg 101
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 6014 gcttggctctgagatctgactcaaatctttctctttaccataagtgaagtcatcaagacg 6073
Query: 102 agatttttggaaactgatggaaatgggtttcgagtaaccctctctgtgcaaacaatgcac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6074 agatttttggaaactgatggaaatgggtttcgagtaaccctctctgtgcaaacaatgcac 6133
Query: 162 catttctttccacattggtcttgattcaatgaagtcttctccgataaatgctttgatttt 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6134 catttctttccacattggtcttgattcaatgaagtcttctccgataaatgctttgatttc 6193
Query: 222 cttgataccgttggatctacggccgtacttacaccagatcccatcacccctccaaaacca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6194 cttgataccgttggatctacggccgtacttacaccagatcccatcacccctccaaaacca 6253
Query: 282 atcctctaaatggtttccaaacttcgcagaccacttcatatcgggattgaatcgatttga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6254 atcctctaaatggtttccaaacttcgcagaccacttcatatcgggattgaatcgatttga 6313
Query: 342 cgagtcatctttgacatagaactcattgtccgtattagaatgaacatggtacccgtcgat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 cgagtcatctttgacatagaactcattgtccgtattagaatgaacatggtacccgtcgat 6373
Query: 402 atcattatttttgatcttgttataccgttcattagctaaacccaacggaagtccatttct 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 atcattatttttgatcttgttataccgttcattagctaaacccaacggaagtccatttct 6433
Query: 462 actcaaagcaagatctactacagccgat-ccacgttcgtttgggtataagggctgccaat 520
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6434 actcaaagcaagatctactacagccgatcccacgttcgtttgggtataagggctgccaat 6493
Query: 521 aaacataacttgtccacccaaagccttgtcc 551
|||||||||||||||||||||||||||||||
Sbjct: 6494 aaacataacttgtccacccaaagccttgtcc 6524
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6069
Number of Sequences: 1807
Number of extensions: 6069
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)