BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG10FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1001 0.0
3x_Contig987 276 7e-74
>3x_Contig1803
Length = 52241
Score = 1001 bits (505), Expect = 0.0
Identities = 505/505 (100%)
Strand = Plus / Minus
Query: 86 cttgtccgtcacatgccatatcaagatctgtgagtccttctaactgaagcattcttttta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgtccgtcacatgccatatcaagatctgtgagtccttctaactgaagcattcttttta 446
Query: 146 taacttcctgattgacattattatcttcagcaaccaaaactctatgccgagtaacttcac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacttcctgattgacattattatcttcagcaaccaaaactctatgccgagtaacttcac 386
Query: 206 ttgctacagatgatatactcctagtactggtcgccgtacccgtactttgtaaaaatggtc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgctacagatgatatactcctagtactggtcgccgtacccgtactttgtaaaaatggtc 326
Query: 266 tatcaacacgaacattcccaacgctattttcagtagaattactggcttttctctcactga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcaacacgaacattcccaacgctattttcagtagaattactggcttttctctcactga 266
Query: 326 cattgttatcgctatgtccgtcgatactagatttagatttctttgtttgaacagatttcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattgttatcgctatgtccgtcgatactagatttagatttctttgtttgaacagatttcc 206
Query: 386 tagaggaattgattttaaatttaacctttctgttcttcctgctgtgaatattgaactcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tagaggaattgattttaaatttaacctttctgttcttcctgctgtgaatattgaactcat 146
Query: 446 cttcaaactgtttttcagcaccatcgaatactatctcttttgtttgctgtagtggcacag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cttcaaactgtttttcagcaccatcgaatactatctcttttgtttgctgtagtggcacag 86
Query: 506 tgaaaataaatttacttccaacaccaactttcgaatccaacttcattgtacctttcatca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tgaaaataaatttacttccaacaccaactttcgaatccaacttcattgtacctttcatca 26
Query: 566 tctttgccaactgcctacaaatgga 590
|||||||||||||||||||||||||
Sbjct: 25 tctttgccaactgcctacaaatgga 1
>3x_Contig987
Length = 2408
Score = 276 bits (139), Expect = 7e-74
Identities = 153/155 (98%), Gaps = 2/155 (1%)
Strand = Plus / Minus
Query: 731 gtaccttaagatctctgaacgtattctcttccgtatctgaatccgttgaagacagaactt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2408 gtaccttaagatctctgaacgtattctcttccgtatctgaatccgttgaagacagaactt 2349
Query: 791 tcttgaactgcgaatggaaaattgcatcatcgtaagagcttgaagtacttgtagataata 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 tcttgaactgcgaatggaaaattgcatcatcgtaagagcttgaagtacttgtagataata 2289
Query: 851 ttgacatcttttcttttttcgtcttccgttttctt 885
||||||||||||| ||||||||||| |||||||||
Sbjct: 2288 ttgacatcttttc-tttttcgtctt-cgttttctt 2256
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7242
Number of Sequences: 1807
Number of extensions: 7242
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)