BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG10RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1397 1550 0.0
>3x_Contig1397
Length = 8011
Score = 1550 bits (782), Expect = 0.0
Identities = 851/868 (98%), Gaps = 6/868 (0%)
Strand = Plus / Plus
Query: 41 gcttttatctctaaaaa--attcttta-aaaatttgaatttgcaaagtgacgctcttcaa 97
|||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3491 gcttttatctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttcaa 3550
Query: 98 tgaggtgggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaata 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3551 tgaggtgggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaata 3610
Query: 158 gctgaaattgtttctttaactccttcactctctaaactaagtagcaaaaactaggataaa 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3611 gctgaaattgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaaa 3670
Query: 218 aagatccaaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggatta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 aagatccaaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggatta 3730
Query: 278 tctaaccgaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3731 tctaaccgaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaagaa 3790
Query: 338 tattctgtatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3791 tattctgtatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtgat 3850
Query: 398 ggatggtggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3851 ggatggtggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggttc 3910
Query: 458 ggcctggtgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3911 ggcctggtgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaagaa 3970
Query: 518 ctttgtccgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3971 ctttgtccgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaaa 4030
Query: 578 ataacaagcatttaaactatataggttgaaatttatatatttttctcttggttttttttc 637
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4031 ataacaagcatttaaactatataggttgaaatttatatatttttctcttgtttttttttc 4090
Query: 638 tttcattttgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaat 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4091 tttcattttgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaat 4150
Query: 698 gagctttaagttagttcagctgaaatatactgactgacattcagaanaaactgaaa-tgt 756
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 4151 gagctttaagttagttcagctgaaatatactgactgacattcagaa-aaactgaaattgt 4209
Query: 757 tctagttacaaagacacgaagtaggggaaaaagggaaaagaagcgaaaaattattagatt 816
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct: 4210 tctagttacaaagacacgaagta-gggaaaaaggaaaaagaagcgaaaaattataagatt 4268
Query: 817 gtgaggtctgaaaactggaaattcgaaatcataccgggntgaatgaatcatgatccagaa 876
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 4269 gtgaggtctgaaaactggaaattcgaatcaataccgggttgaatgaatcatgatccagaa 4328
Query: 877 agaatacagcaaacaaagaaaaattttt 904
||||||||||||||| |||||| |||||
Sbjct: 4329 agaatacagcaaacagagaaaatttttt 4356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,123
Number of Sequences: 1807
Number of extensions: 12123
Number of successful extensions: 245
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)