BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG12FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1497 0.0
>3x_Contig1716
Length = 19108
Score = 1497 bits (755), Expect = 0.0
Identities = 835/855 (97%), Gaps = 5/855 (0%)
Strand = Plus / Minus
Query: 86 tactctcatcatccgccagtttgaattgggacacattagattcatcgttgtgaaagaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16559 tactctcatcatccgccagtttgaattgggacacattagattcatcgttgtgaaagaatt 16500
Query: 146 tggaaccatctttacaaatcactaggttccagtagtttcgtagaggtaaacagaacactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16499 tggaaccatctttacaaatcactaggttccagtagtttcgtagaggtaaacagaacactg 16440
Query: 206 gcactctcaattttttcataccagcttgctggcttccgaactcttttggtttttcctttg 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16439 gcactctcaattccttcataccagcttgctggcttccgaactcttttggtttttcctttg 16380
Query: 266 tggataccttggacctcgtattgaagtagtagaaattccccgaaggatctttaaatcgct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16379 tggataccttggacctcgtattgaagtagtagaaattccccgaaggatctttaaatcgct 16320
Query: 326 tccattcgctcatacttgattcagataggaacaatgggctctccgccaatttagttaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16319 tccattcgctcatacttgattcagataggaacaatgggctctccgccaatttagttaaaa 16260
Query: 386 ctttaaaactttactttcacagacaggtgcagcaatgcaaataacatctctgagacaggt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16259 ctttaaaactttactttcacagacaggtgcagcaatgcaaataacatctctgagacaggt 16200
Query: 446 cttccacctcgtacactgggttgttctcactaagaaaatccattgaagagccgttaaaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199 cttccacctcgtacactgggttgttctcactaagaaaatccattgaagagccgttaaaca 16140
Query: 506 aaggttcgttcttttattttttttttaatgtcgacctttaaaatgaaataaaatacaatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16139 aaggttcgttcttttattttttttttaatgtcgacctttaaaatgaaataaaatacaatc 16080
Query: 566 aaagttagaagaaatccagtggcaaacctttgaaactagagattgaacagcaattggatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16079 aaagttagaagaaatccagtggcaaacctttgaaactagagattgaacagcaattggatt 16020
Query: 626 caaccagatagttaaacttgtagctaaagttcatcgaaagtagcagcaagagcatttctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16019 caaccagatagttaaacttgtagctaaagttcatcgaaagtagcagcaagagcatttctg 15960
Query: 686 tgagcgtacaggtaattggtctgtgagaatataaagaacaacttagaagtcagaacagat 745
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15959 tgagcgtacaggtaattggtctgtgagaatataaagaacaactaagaagtcagaacagat 15900
Query: 746 ggggttcagaagatacgattcgagaac-accattttctcgccagaggaaaga-tattcca 803
||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||
Sbjct: 15899 ggggtccagaagatacgattcgagaacaaccattttctcgccagagggaagattatacca 15840
Query: 804 ggttgaatacgctttagaatccattt-acatgctggtactgcgattggtatcatgactga 862
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 15839 ggttgaatacgctttagaatccatttcacatgctggtactgcgattggtatcatgactga 15780
Query: 863 acaaggttttgttttacca-ctgaaagaaaagtgacatcgaactttttagaccagga-ac 920
||||||| |||| ||| || |||||||||||||||||||||| | ||||| || || ||
Sbjct: 15779 acaaggtattgtattagcagctgaaagaaaagtgacatcgaaactattagaacaagatac 15720
Query: 921 tttaagtgagaaatt 935
|| ||||||||||||
Sbjct: 15719 ttcaagtgagaaatt 15705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8761
Number of Sequences: 1807
Number of extensions: 8761
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)