BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZG12RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1505 0.0
>3x_Contig1719
Length = 15804
Score = 1505 bits (759), Expect = 0.0
Identities = 894/924 (96%), Gaps = 17/924 (1%)
Strand = Plus / Minus
Query: 49 gcttaaaggtgttccctaaaagtcttgttattggttaatattgttggagatatgctatga 108
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14917 gcttaaaggtgttccctaaaagtccagttattggttaatattgttggagatatgctatga 14858
Query: 109 gcaagagcggagtaacgagaatagacgctctttcgctccctcgggccataaaacctttat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857 gcaagagcggagtaacgagaatagacgctctttcgctccctcgggccataaaacctttat 14798
Query: 169 ccgttctttcagcttagctcatctcaggtgcattttgtcagaggccggcccnnna-ttca 227
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 14797 ccgttctttcagcttagctcatctcaggtgcattttgtcagaggccggccctttagttca 14738
Query: 228 tctctttccttcttcggtttgcgtacttttcatttcgttcaacgtcgttactgtgtggag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14737 tctctttccttcttcggtttgcgtacttttcatttcgttcaacgtcgttactgtgtggag 14678
Query: 288 gggtaatcggagtttttcaagcaacacaataaaaaaaaaaaagaatatggtaatgaagta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14677 gggtaatcggagtttttcaagcaacacaataaaaaaaaaaaagaatatggtaatgaagta 14618
Query: 348 gacagaagaacgttcgcatagtattggtattactgtacaattcctaaaatcgatactccg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14617 gacagaagaacgttcgcatagtattggtattactgtacaattcctaaaatcgatactccg 14558
Query: 408 gaaaaaaaaataatcgaaatcgcaagtcagaagacgcagcatcaggttgaagcttttttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14557 gaaaaaaaaataatcgaaatcgcaagtcagaagacgcagcatcaggttgaagcttttttt 14498
Query: 468 ctaagttctactggtcttacaataggaaaactccaaaaaaagtattcacaaaatggaagt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14497 ctaagttctactggtcttacaataggaaaactccaaaaaaagtattcacaaaatggaagt 14438
Query: 528 tgggaagtgtaactccccgcaattcggaggtggggcagcttccccctcacctgacccctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14437 tgggaagtgtaactccccgcaattcggaggtggggcagcttccccctcacctgacccctt 14378
Query: 588 caatcgcatctcggtgatactttttaatactgggaacacttattacgagaaaaggggggt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14377 caatcgcatctcggtgatactttttaatactgggaacacttattacgagaaaaggggggt 14318
Query: 648 aagcagagaaaatgaagcagccacctgacggccatgccaggccgccatcctggtgggggc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14317 aagcagagaaaatgaagcagccacctgacggccatgccaggccgccatcctggtgggggc 14258
Query: 708 gggcggaggaggggaaagcttttttggagctagttcaagagcgcaagtggggtaacatca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14257 gggcggaggaggggaaagcttttttggagctagttcaagagcgcaagtggggtaacatca 14198
Query: 768 tattgaagtaattattcgatatccatactgtgtntgttttttttccggtttgggttgggt 827
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 14197 tattgaagtaattattcgatatccatactgtgt-tgttttttttccggttt-ggttgggt 14140
Query: 828 aagggaatttaccggcctacttactacctttgtcaaattggtcaaccttgccataaatat 887
|| |||||||||| |||||||||||||| ||||| |||| |||||| ||| ||| |||||
Sbjct: 14139 aa-ggaatttacc-gcctacttactacc-ttgtc-aatttgtcaactttg-catcaatat 14085
Query: 888 cactggtggccccttccttaaccttcaaataggatgtttgaaataaaatttttttttttt 947
|||||||| ||| ||||||| | ||| || ||||||||| |||| ||||||||||||||
Sbjct: 14084 cactggtg--cccctccttaa-catcagat-ggatgtttg-aatagaatttttttttttt 14030
Query: 948 tttttggcccaaaagaaaagttgg 971
|| | ||||||||||||||||
Sbjct: 14029 tt----ggccaaaagaaaagttgg 14010
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,141
Number of Sequences: 1807
Number of extensions: 25141
Number of successful extensions: 3037
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)