BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH01FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig721 367 e-101
3x_Contig1586 206 6e-53
>3x_Contig721
Length = 1977
Score = 367 bits (185), Expect = e-101
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 86 ttagataacgataaagacttattaaaccgagtagaagagataaaagcgcaattccaagac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 ttagataacgataaagacttattaaaccgagtagaagagataaaagcgcaattccaagac 1841
Query: 146 agggccaaaacacctttcagcgctgaagaagatgttgatgatatatatgatgcagatgag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 agggccaaaacacctttcagcgctgaagaagatgttgatgatatatatgatgcagatgag 1901
Query: 206 catggggcacggagccggcaaatcatgtctgcgcgttccgggacagggaacaaggaagta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 catggggcacggagccggcaaatcatgtctgcgcgttccgggacagggaacaaggaagta 1961
Query: 266 atacc 270
|||||
Sbjct: 1962 atacc 1966
>3x_Contig1586
Length = 12315
Score = 206 bits (104), Expect = 6e-53
Identities = 225/263 (85%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 644 taccgtagattcgcctttccgaaagtacgagctttggatcaacaatttatagagttgtac 703
||||||||||||||| ||||||||||||| ||||||| ||| | |||||||||| || |
Sbjct: 12253 taccgtagattcgccattccgaaagtacgcgctttggcacaaaactttatagagtagtcc 12194
Query: 704 gatgatactgggatcataaagctggccacggaaaacaactggctatctgttgaatggtga 763
||||| | | | || ||| ||| || | ||||| ||||| | ||||||| ||||||||
Sbjct: 12193 gatgaaaatagaatattaatgctagcaaaagaaaaaaactgacaatctgttaaatggtga 12134
Query: 764 attgaatctcctcattgctggacctttttttttttttttttgaacagtgggtngatcaat 823
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct: 12133 attgaatctcctcattgaatggcctttttttttttttttttgaacagtgggtgaatcaat 12074
Query: 824 tgagtcttcatatttaaaaga-caaaattccttatttacaactaggaattgatgttcaca 882
||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |||
Sbjct: 12073 tgagtcttcatatctaaaagaccaaaattccttattaacaacta-gaattgatgtcaaca 12015
Query: 883 ttctagggggtgaaaattatgtt 905
|||||| | ||||| ||||||||
Sbjct: 12014 ttctagtgtgtgaatattatgtt 11992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,459
Number of Sequences: 1807
Number of extensions: 17459
Number of successful extensions: 2803
Number of sequences better than 1.0e-20: 2
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)