BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZH01RM1.SCF screened BAC_end
         (891 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1549                                                        1586   0.0  

>3x_Contig1549 
          Length = 13677

 Score = 1586 bits (800), Expect = 0.0
 Identities = 830/839 (98%), Gaps = 1/839 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   atatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaaggcattg 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  atatttgttttgccatttttatgctgtacgtacctattgatgtttttggacaaggcattg 637

                                                                        
Query: 104  ttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagttttctaat 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  ttaaattatgccgcatcgatggggatcaaggacaatttggttggtgatgagttttctaat 697

                                                                        
Query: 164  ttgggtactattttctctgcatcgtatatctttgcagaaccgtttgcggtgtatttgctc 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  ttgggtactattttctctgcatcgtatatctttgcagaaccgtttgcggtgtatttgctc 757

                                                                        
Query: 224  caaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtgtcgttgtc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  caaaggtttcccgtgtctcgagtgttgggctcgttcatcatatgttggggtgtcgttgtc 817

                                                                        
Query: 284  gtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttctattaggg 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  gtttgtcattgtgtttgtaagacatatgcaagtttgatgattgtacgtgttctattaggg 877

                                                                        
Query: 344  ttgttcgagtcgtgtagtgctgtaggatgcattacagtcaacggtatgtattatacgaaa 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  ttgttcgagtcgtgtagtgctgtaggatgcattacagtcaacggtatgtattatacgaaa 937

                                                                        
Query: 404  tcggaacaaacgcaaagaattggttactggngctgctcaagcaggaaccggttatatcat 463
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 938  tcggaacaaacgcaaagaattggttactgg-gctgctcaagcaggaaccggttatatcat 996

                                                                        
Query: 464  tggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacctcgtggca 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  tggtggtttaatgtcatttgggtttttacattaccacggaactgaatttacctcgtggca 1056

                                                                        
Query: 524  aatcatgttccttgttgtcggtttagtgaccgtgggaatcggtatagtaacctatttcta 583
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1057 aatcatgttccttgttgtcggtttagtgaccgtgggattcggtatagtaacctatttcta 1116

                                                                        
Query: 584  tttaccagataacgttcctaaggcatggttccttaacgagaaggagaaagtccaagtcat 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tttaccagataacgttcctaaggcatggttccttaacgagaaggagaaagtccaagtcat 1176

                                                                        
Query: 644  tgaacatatcagatcaaaccaaactggtcttgaaacaaagaaaatcaagatgcaccaagt 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 tgaacatatcagatcaaaccaaactggtcttgaaacaaagaaaatcaagatgcaccaagt 1236

                                                                        
Query: 704  gaaagaattgttactcaaggataaattgacatggccaatgttattattgactggttgttc 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 gaaagaattgttactcaaggataaattgacatggccaatgttattattgactggttgttc 1296

                                                                        
Query: 764  tcaaatttcaactggatccattggaacctttttagtgaccatcacaggtacattttgttt 823
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 1297 tcaaatttcaactggatccattggaaccttttcagtgaccatcacaggtacatttggttt 1356

                                                                       
Query: 824  tgatagctaccagacattccttttggcacttccnatcggatgctttaccatcatgatta 882
            ||||||||||||||||| |||||||  |||||| ||||||||| |||||||||||||||
Sbjct: 1357 tgatagctaccagacatcccttttgcaacttcctatcggatgcgttaccatcatgatta 1415


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6553
Number of Sequences: 1807
Number of extensions: 6553
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)