BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH02RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1580 0.0
>3x_Contig1581
Length = 11429
Score = 1580 bits (797), Expect = 0.0
Identities = 856/871 (98%), Gaps = 4/871 (0%)
Strand = Plus / Minus
Query: 47 gcttcgatgtgaaaaactcgggtataactacagcattattatgagaatgactatgcatcg 106
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 10979 gcttcgatgtgaaaaactcgggaa-aactacagcattattatgagaatgactatgcatcg 10921
Query: 107 aaattacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtcctta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10920 aaattacttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtcctta 10861
Query: 167 gcacaaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatatttttgtt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10860 gcacaaaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaa 10801
Query: 227 cctgtacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10800 cctgtacatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaat 10741
Query: 287 ttataaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 ttataaaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagt 10681
Query: 347 agccaggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagtttta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10680 agccaggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagtttta 10621
Query: 407 aaacaagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10620 aaacaagtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccact 10561
Query: 467 gctaatgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10560 gctaatgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaa 10501
Query: 527 attacatagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10500 attacatagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaata 10441
Query: 587 ggaactgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10440 ggaactgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttcttccg 10381
Query: 647 aattcttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10380 aattcttcagtctttgagatttgtccacagcagacaggtaagatactgaagatacttccg 10321
Query: 707 gaagaaaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10320 gaagaaaatccataaatggcactgaatgcgaataacaccgctctggtagtggcaaaaggt 10261
Query: 767 aaccacatcacaaaagttattatgccaagaaacactagcgtaatcattgcaacgttaaac 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260 aaccacatcacaaaagttattatgccaagaaacactagcgtaatcattgcaacgttaaac 10201
Query: 827 cttncgaaga-atcactgaagaatcctggtaaccatctncctggtataaccggc-aggtt 884
||| |||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct: 10200 cttccgaagatatcactgaagaatcctggtaaccatctccctggtat-accggcaaggtt 10142
Query: 885 aactaccatgacccatagataactatcagat 915
||||||||||||| |||||||||||||||||
Sbjct: 10141 aactaccatgaccaatagataactatcagat 10111
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6547
Number of Sequences: 1807
Number of extensions: 6547
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)