BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1120 0.0
>3x_Contig1785
Length = 37935
Score = 1120 bits (565), Expect = 0.0
Identities = 583/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 338 agaagctccttctctaccaactaggagaaatgttccacccccaccggaaagtgacgagga 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagctccttctctaccaactaggagaaatgttccacccccaccggaaagtgacgagga 60
Query: 398 cgaagaagatgatgatgaaagagcattttctaagtctcaaaatactcctccatctccagc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaagaagatgatgatgaaagagcattttctaagtctcaaaatactcctccatctccagc 120
Query: 458 accaagagcatccaaacctggaaagaaagaatccggaccatcagctattgctgaatatga 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accaagagcatccaaacctggaaagaaagaatccggaccatcagctattgctgaatatga 180
Query: 518 ttacgaagccggcgaagataatgaattgacttttgaagaaaatgaaagaatcattaatat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttacgaagccggcgaagataatgaattgacttttgaagaaaatgaaagaatcattaatat 240
Query: 578 tcaatttgtcgatgatgattggtggttgggtgaacttgaatcatcaggtgaaaagggtct 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaatttgtcgatgatgattggtggttgggtgaacttgaatcatcaggtgaaaagggtct 300
Query: 638 attcccaagtaattacgtcaacttagaggaatgatccaataaattaccactactctaact 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attcccaagtaattacgtcaacttagaggaatgatccaataaattaccactactctaact 360
Query: 698 ttatcattgttaataaatgatgatgttataagttggtgggactttgaaatgaatatatca 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatcattgttaataaatgatgatgttataagttggtgggactttgaaatgaatatatca 420
Query: 758 tgtatactttacaagtaaataatgttaaagaaataaagtacaaaagtaaactaaacaaaa 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtatactttacaagtaaataatgttaaagaaataaagtacaaaagtaaactaaacaaaa 480
Query: 818 gtctacttatttgccttttacaantttcaaatttcatatctactacgctcacttcttctc 877
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 481 gtctacttatttgccttttacaa-tttcaaagttcatatctactacgctcacttcttctc 539
Query: 878 cagcatcgncattataatcataccattcgttttcgtcgtctttaaact 925
|||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct: 540 cagcatcgtcatcataatcataccattcgttttcgtcgtcttcaaact 587
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,261
Number of Sequences: 1807
Number of extensions: 10261
Number of successful extensions: 384
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)