BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH04RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1645 0.0
>3x_Contig1640
Length = 15521
Score = 1645 bits (830), Expect = 0.0
Identities = 839/841 (99%), Gaps = 1/841 (0%)
Strand = Plus / Minus
Query: 40 gcttcttta-caattgatttcccttctgtagtccatcgataaatttcttttctattagtt 98
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5318 gcttctttaacaattgatttcccttctgtagtccatcgataaatttcttttctattagtt 5259
Query: 99 taaattcaatggattggaccattgtctccaaatttattatctgatcagaacactgttcca 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5258 taaattcaatggattggaccattgtctccaaatttattatctgatcagaacactgttcca 5199
Query: 159 ataatcgttcctgataatgtatccgctttaacaacaatctcgcacgattatcctgtttca 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5198 ataatcgttcctgataatgtatccgctttaacaacaatctcgcacgattatcctgtttca 5139
Query: 219 attgcttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatca 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5138 attgcttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatca 5079
Query: 279 aattttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaaca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5078 aattttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaaca 5019
Query: 339 ttgccttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5018 ttgccttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatat 4959
Query: 399 atgtgcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccacttt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4958 atgtgcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccacttt 4899
Query: 459 cgattccgttactaactccaaacccttctccaatatcaaaaagtcgtttgacaataagtc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4898 cgattccgttactaactccaaacccttctccaatatcaaaaagtcgtttgacaataagtc 4839
Query: 519 ttcaactgttgggctttcctcatagatgcatagaatggatattcactgtatcgataacgc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 ttcaactgttgggctttcctcatagatgcatagaatggatattcactgtatcgataacgc 4779
Query: 579 ataatggacctttggatcgacataaagatttcaagatagtatatttaaatattacccaga 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 ataatggacctttggatcgacataaagatttcaagatagtatatttaaatattacccaga 4719
Query: 639 caaagtcacatgcaacccatttgccagaaaaagatgaaatagtattcaagtcacgtgaaa 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 caaagtcacatgcaacccatttgccagaaaaagatgaaatagtattcaagtcacgtgaaa 4659
Query: 699 ttacacagaacactgcttgtaaaagaccgctctgggcggtcgcaagcacaacaacatgaa 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 ttacacagaacactgcttgtaaaagaccgctctgggcggtcgcaagcacaacaacatgaa 4599
Query: 759 atcaagccgcaagaagttagccagccgcctacttcgtagttaaagggtttttgacatatt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 atcaagccgcaagaagttagccagccgcctacttcgtagttaaagggtttttgacatatt 4539
Query: 819 ctcgagatgaatcatgtcaactatacgatcatttgtagntgaacactatcatacacactt 878
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4538 ctcgagatgaatcatgtcaactatacgatcatttgtagttgaacactatcatacacactt 4479
Query: 879 g 879
|
Sbjct: 4478 g 4478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6476
Number of Sequences: 1807
Number of extensions: 6476
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)