BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1606 0.0
>3x_Contig1794
Length = 36744
Score = 1606 bits (810), Expect = 0.0
Identities = 830/834 (99%), Gaps = 2/834 (0%)
Strand = Plus / Plus
Query: 48 tatggttgaagaaattagatataatcttttgaggaaggaagtccaggtcagagtataatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 tatggttgaagaaattagatataatcttttgaggaaggaagtccaggtcagagtataatt 5447
Query: 108 catcgatggctctttttttctttgatatagcggacgaagtctcatcagaaacgataagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 catcgatggctctttttttctttgatatagcggacgaagtctcatcagaaacgataagaa 5507
Query: 168 ttgagtccgatggtcctcctttcacttcagaatcgtttaattcggcatcatcatctatga 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5508 ttgagtccgatggtcctcctttcacttcagaatcgtttaattcggcatcagcatctatga 5567
Query: 228 gaaccttcttaacattgataaaggctttattccttggtgccctcttctttactgctctag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 gaaccttcttaacattgataaaggctttattccttggtgccctcttctttactgctctag 5627
Query: 288 gtggtatgtatgcctctgcttgctcttgatgctctggttctgtgtcctttggcagcccta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 gtggtatgtatgcctctgcttgctcttgatgctctggttctgtgtcctttggcagcccta 5687
Query: 348 gatcaaagtctaagagtgtatcatcatgcaatgagtgagtaatatcagcccttctcccga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 gatcaaagtctaagagtgtatcatcatgcaatgagtgagtaatatcagcccttctcccga 5747
Query: 408 tctctacagacatgtcgctaccatggctagactgattaccagaaatattctgatcatcat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 tctctacagacatgtcgctaccatggctagactgattaccagaaatattctgatcatcat 5807
Query: 468 cgtttaatcccaaatcccaatcatcgttaagtggtagcaattcatcatcatcgtcattgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 cgtttaatcccaaatcccaatcatcgttaagtggtagcaattcatcatcatcgtcattgt 5867
Query: 528 catttctaatagtcaaatcaccttcattttctccatcatccgcgtttacttcactagcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5868 catttctaatagtcaaatcaccttcattttctccatcatccgcgtttacttcactagcag 5927
Query: 588 taacacgagtcccttcaccccatgatttagtgttattgctttgattagaatcaccaaggt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5928 taacacgagtcccttcaccccatgatttagtgttattgctttgattagaatcaccaaggt 5987
Query: 648 caaaatctaatttcaaatgagatgaatcgtgatgttcaatagcattcaagtcatcatctt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5988 caaaatctaatttcaaatgagatgaatcgtgatgttcaatagcattcaagtcatcatctt 6047
Query: 708 catctgccaggaatcgccttccaacttctaaggacatatcccatgcttgttgttgtgctg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 catctgccaggaatcgccttccaacttctaaggacatatcccatgcttgttgttgtgctg 6107
Query: 768 caatggcggatgttacaggtgctgctccttgcacttgtctttccattgatcgttcagcga 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6108 caatggcggatgttacaggtgctgctccttgcacttgtctttccattgatcgttcagcga 6167
Query: 828 tc-aaaaaccttctggcacttggatatctttc-agaaaaccaaactgggcatct 879
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 6168 tcaaaaaaccttctggcacttggatatctttcaagaaatccaaactgggcatct 6221
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7865
Number of Sequences: 1807
Number of extensions: 7865
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)