BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH07FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1430 1457 0.0
>3x_Contig1430
Length = 7411
Score = 1457 bits (735), Expect = 0.0
Identities = 815/835 (97%), Gaps = 5/835 (0%)
Strand = Plus / Minus
Query: 87 acggatcaagcaagcaggaaaatggcagttataatgatacgtctatcttgaattctttaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7093 acggatcaagcaagcaggaaaatggcagttataatgatacgtctatcttgaattctttaa 7034
Query: 147 atttgaaggaggaaataggtaatttggttttatcaattgatacacttaaaaagcagctgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7033 atttgaaggaggaaataggtaatttggttttatcaattgatacacttaaaaagcagctgg 6974
Query: 207 agcttctacatcatttgatattgaaggcggagctaactaataatcaaacgagactgatat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6973 agcttctacatcatttgatattgaaggcggagctaactaataatcaaacgagactgatat 6914
Query: 267 tgttgaagaaatcggaaagaacacttagaagagaactggaatacaaagaattgcttaaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6913 tgttgaagaaatcggaaagaacacttagaagagaactggaatacaaagaattgcttaaac 6854
Query: 327 aacagcatatggttcatgagaacgctaatattttatatg-gcagggcaaaactttgtatt 385
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6853 aacagcatatggttcatgagaacgctaatattttatatgcgcagggcaaaactttgtatt 6794
Query: 386 aaatcttatttgactgatgtgtctcttgaagatggtaaagaaactgtttactatttgata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6793 aaatcttatttgactgatgtgtctcttgaagatggtaaagaaactgtttactatttgata 6734
Query: 446 aatgtacagcatatcttcaacaaccagttagttacgtgggatatacctcgaagattcagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 aatgtacagcatatcttcaacaaccagttagttacgtgggatatacctcgaagattcagc 6674
Query: 506 gaattctacaggttgaactcctacttgaagaagaagtatccgggggtggtaagctatttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6673 gaattctacaggttgaactcctacttgaagaagaagtatccgggggtggtaagctatttg 6614
Query: 566 caaaattctaatggcttcccggagagagtaaaaatgtcattaaagtatcatgtatcgaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6613 caaaattctaatggcttcccggagagagtaaaaatgtcattaaagtatcatgtatcgaaa 6554
Query: 626 acattattgtatgaagaaagaagaaaaagactcgaatactacatgcaggaattgttaaaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6553 acattattgtatgaagaaagaagaaaaagactcgaatactacatgcaggaattgttaaaa 6494
Query: 686 atacgtgaggtttgtcaagatgaatacttttagaaatatttgacggatgtttccaacact 745
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6493 atacgtgaggtttgtcaagatgaatactttagaaaatatttgacggatgtttccaacac- 6435
Query: 746 ttttaagtttaaagagaatttggaagaagatgtttgagataagagaagatcaatggttct 805
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6434 ttttaaggttaaagagaatttggaagaagatgttgaggataagagaagatcaatggttct 6375
Query: 806 ttttaagacggacaacacccgttggagaagttacaaatgtattagcaggggagatttgat 865
||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 6374 tttaaagacggacaaca-ccgttggagaagttacaaatgtatcagca-gggagatttgat 6317
Query: 866 gatctccaaagtttctcaggaggaattaaatttctttggagacgagagaaatttc 920
|||| | ||||||||||| || |||||| ||||||||| |||||||||||||||
Sbjct: 6316 gatcccaaaagtttctca-gatgaattagatttctttgaggacgagagaaatttc 6263
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8782
Number of Sequences: 1807
Number of extensions: 8782
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)