BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH07RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig634 1479 0.0
>3x_Contig634
Length = 1748
Score = 1479 bits (746), Expect = 0.0
Identities = 838/859 (97%), Gaps = 8/859 (0%)
Strand = Plus / Plus
Query: 49 tgaagcacacctagtgtggaca-tggatctctgcttctctatcgcctactgtttttccgt 107
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgaagcacacctagtgtggacaatggatctctgcttctctatcgcctactgtttttccgt 614
Query: 108 ttcgtaaccccatgcctttgtttacattttaactaatcttaattattgatgatttcattt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcgtaaccccatgcctttgtttacattttaactaatcttaattattgatgatttcattt 674
Query: 168 gaagtaacgggaaaagttgcttggtagataaggcacgtagaggtcaggaagcttgcaaca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaagtaacgggaaaagttgcttggtagataaggcacgtagaggtcaggaagcttgcaaca 734
Query: 228 tcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaatattaatat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcaaaagattaatgcttagatgacttccatggagagctgaaattatatgaatattaatat 794
Query: 288 atttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgttaataatacat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 atttgtttgattggtaccttgtatgttgtttatgtgtatatttatatgttaataatacat 854
Query: 348 agtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaaggtgggaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 agtaccaactctggtgcacttgtaagatacctatgcagtgtaagaaaggaaggtgggaaa 914
Query: 408 tttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactgatatcttcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tttcttcaattactcatggcctgagcgttgaagttttttgatcgtgactgatatcttcta 974
Query: 468 aaacttgatgtataacttcttcttgcagtctcttctcgttctgatcttgtgagttttctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 aaacttgatgtataacttcttcttgcagtctcttctcgttctgatcttgtgagttttctt 1034
Query: 528 cgtggtcagaattttgatcttcaccagaatcatctttgccattttcttctgtttgtggct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 cgtggtcagaattttgatcttcaccagaatcatctttgccattttcttctgtttgtggct 1094
Query: 588 cagattcttgagttatggcaggtggagcgtattgttggtgctgggaatgctgctgttctg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 cagattcttgagttatggcaggtggagcgtattgttggtgctgggaatgctgctgttctg 1154
Query: 648 aaggttctgtcaataatttgtgtaaagcactatcatggttggcgtaaagatctttgaact 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 aaggttctgtcaataatttgtgtaaagcactatcatggttggcgtaaagatctttgaact 1214
Query: 708 tacccatttccacaactgaaccatcgatgccaagtacaataacattctcggattctctga 767
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 1215 tacccatttccacaactgaaccatcgatgccaagtacaataacattctcgtatcttctta 1274
Query: 768 ttgtgctcaatctatgagnncatgctgat-atagttaattc-tttgctcttcattaacc- 824
|| | ||||||||||||| |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 1275 tttttctcaatctatgagca-atgctgataatatttaattcttttgctcttcattaacct 1333
Query: 825 ctcccaagngtagtttgatagcgccctcactttcaacgtcttagggcagatgtagccttc 884
| || || |||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1334 ccccaaattgtag-ttgatagcgccctcactttcaacgtc-tagggcagatgtag-cttc 1390
Query: 885 gtcgagaatcaaaatttta 903
|||||||||||||||||||
Sbjct: 1391 gtcgagaatcaaaatttta 1409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7164
Number of Sequences: 1807
Number of extensions: 7164
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)