BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH09FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1140 1580 0.0
>3x_Contig1140
Length = 5352
Score = 1580 bits (797), Expect = 0.0
Identities = 844/859 (98%), Gaps = 1/859 (0%)
Strand = Plus / Plus
Query: 87 catatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 catatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttct 554
Query: 147 cactttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cactttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaa 614
Query: 207 cattgtgtgatgctcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttg 266
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cattgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttg 674
Query: 267 gtggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gtggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgtt 734
Query: 327 taaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttga 794
Query: 387 agggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttg 854
Query: 447 gcatgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttgga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gcatgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttgga 914
Query: 507 agggtaaaaaaaaggtctcataagagggggggcgggtagcgctcgagaagatttctgatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agggtaaaaaaaaggtctcataagagggggggcgggtagcgctcgagaagatttctgatt 974
Query: 567 tataagtcacgtgtatgtccgattaagggtgaaatggacttgggttatcaaaattaggtt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tataagtcacgtgtatgtccgattaagggtgaaatggacttgggttatcaaaattaggtt 1034
Query: 627 acaatgccattcaaattattgagatttgaactgaaatgcaatgatcatggagaaagcgtt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 acaatgccattcaaattattgagatttgaactgaaatgcaatgatcatggagaaagcgtt 1094
Query: 687 agacggatagcaaccgggtgatttttgtcgaccaagtacttgctaatatcgtggtataaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 agacggatagcaaccgggtgatttttgtcgaccaagtacttgctaatatcgtggtataaa 1154
Query: 747 gatctgtgatggcatttgtggaatgntttatagtgatcgtttgattgcgctgcggattat 806
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1155 gatctgtgatggcaattgtggaatgttttatagtgatcgtttgattgcgctgcggataat 1214
Query: 807 attttgagtagagagcctttagattgattccctttanacgttgtgttataccgtaatgtc 866
|||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||
Sbjct: 1215 attttgagtagagagcctttagattgattcccttaaaacgtcgtgtaataccgtaatgtc 1274
Query: 867 attggtagtttactcccaagaatgagatctagttcctgtgaaaaggtcagattgtggttt 926
||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||
Sbjct: 1275 attggtagtttactcccaagatagagatctagttcctg-gagaaggtcagattgtgagtt 1333
Query: 927 tacaaccaggcgttttttg 945
||||||||||||| |||||
Sbjct: 1334 tacaaccaggcgtattttg 1352
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6233
Number of Sequences: 1807
Number of extensions: 6233
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)