BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH09RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1443 1516 0.0
>3x_Contig1443
Length = 8994
Score = 1516 bits (765), Expect = 0.0
Identities = 814/827 (98%), Gaps = 3/827 (0%)
Strand = Plus / Minus
Query: 44 gcttcttcttcgtccaaaatttcttacaaataagatgggtctctagcgacttctgggaac 103
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2724 gcttcttcttcgtccaaaatttcgaacaaataagatgggtctctagcgacttctgggaac 2665
Query: 104 atatccttaacttgttcgattaaagtgacagacaattgtgaaaaaaagtttcctataggg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 atatccttaacttgttcgattaaagtgacagacaattgtgaaaaaaagtttcctataggg 2605
Query: 164 tagttcatgtactttctagcgtaacgtgcaccacgtctcaaaattcttctcaaattttat 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2604 tagttcatgtactttctagcgtaacgtgcaccacgtctcaaaattcttctcaaaacgtaa 2545
Query: 224 cctctaccttcgttgttaggaacaccaccatcagccaaggcgaaagttaacgtacgaaca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2544 cctctaccttcgttgttaggaacaccaccatcagccaaggcgaaagttaacgtacgaaca 2485
Query: 284 tgatcagccaagactctgtaagcggtgtcaataccatccgtatcctcagcaccaaattta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2484 tgatcagccaagactctgtaagcggtgtcaataccatccgtatcctcagcaccaaattta 2425
Query: 344 ccagtgtatgatctgaccccagtgatttcttggatacggttgaacaaaggttcgaaaacg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 ccagtgtatgatctgaccccagtgatttcttggatacggttgaacaaaggttcgaaaacg 2365
Query: 404 tcggtgtcgtaattagatctaacatcgtgcaaaacggacaccaatctttcgaaacccata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 tcggtgtcgtaattagatctaacatcgtgcaaaacggacaccaatctttcgaaacccata 2305
Query: 464 ccagtatcgacatgtttagccggtagagctcttagagaacgatcttgttctctgttgaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 ccagtatcgacatgtttagccggtagagctcttagagaacgatcttgttctctgttgaat 2245
Query: 524 tgaataaaaacgttattccaaatttccaacacatctggatcgtcttgattaacaagatga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 tgaataaaaacgttattccaaatttccaacacatctggatcgtcttgattaacaagatga 2185
Query: 584 gcagcgtttctaccaccaattctgtcataatgaacttcagaacaaggaccacatggacct 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 gcagcgtttctaccaccaattctgtcataatgaacttcagaacaaggaccacatggacct 2125
Query: 644 tgttcacccatttcccaaaagttatccttggcattacctggcaagatatgatcatccttg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 tgttcacccatttcccaaaagttatccttggcattacctggcaagatatgatcatccttg 2065
Query: 704 acgccaacggatttccacanatcacgagcttcgaagtctggttccaaacccaatttttcg 763
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 acgccaacggatttccacaaatcacgagcttcgaagtctggttccaaacccaatttttcg 2005
Query: 764 tcaccttcgaaat-agtgacgtacaatctatcacctggaataccgtagactttggttcaa 822
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2004 tcaccttcgaaataagtgacgtacaatctatcacctggaataccgtagactttgg-tcaa 1946
Query: 823 caattcccaagagtattcaatagcttnctttcttggaatagtcaccg 869
|||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 1945 caattcccaagagtattcaatagcttcc-ttcttgatatagtcaccg 1900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6972
Number of Sequences: 1807
Number of extensions: 6972
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)