BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZH11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 1661 0.0
>3x_Contig1220
Length = 4729
Score = 1661 bits (838), Expect = 0.0
Identities = 860/867 (99%), Gaps = 1/867 (0%)
Strand = Plus / Minus
Query: 49 tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 tggtgtaccgtccgcattccaggtttcgaaatacctataattcaaatgggtggttggcgc 4199
Query: 109 atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 atgtggattaattggatgaataaccatagagagaccacaggcgaagaattttactcctgt 4139
Query: 169 tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 tgcatctggttcaccagttgcaggatcaataggcagatgcaaatttttgtggtccgcttt 4079
Query: 229 catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 catagccttgatagcaggtggactcaagttcccatgaaccacactgacattaacaccacc 4019
Query: 289 tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tttctcaaacgtagtaccattctgcaacaccatcgagacaccgccaccaccgttgttgcc 3959
Query: 349 acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 acgatcccaagaatcggcttgaaactttacagtatccaaagtttccagacccttggtaat 3899
Query: 409 ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 ttcttgctgtttccggcgcactaaggcctccattctctctctaattggcacttgtgaatc 3839
Query: 469 tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3838 tgtcatcgcacaatgataatatttagaatgtgtgttaagatgaaccggtcgttgagtttc 3779
Query: 529 tgtttgctttaccagacaagtatactggatgtaaagttttatcaatgattctgcttgatt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3778 tgtttgctttaccagacaagtatactggatgtaaagttttatcaatgattctgcttgatt 3719
Query: 589 ggagagaaaagggcagtatagatccaatgcttctcttctcatttcagttggtgagtcgaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3718 ggagagaaaagggcagtatagatccaatgcttctcttctcatttcagttggtgagtcgaa 3659
Query: 649 tggaataattcactttcgttaatatagtcaaaaaaaaaaaatccaaaaagcaagcagact 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3658 tggaataattcactttcgttaatatagtcaaaaaaaaaaaatccaaaaagcaagcagact 3599
Query: 709 tcaagattcagacctggtgataatttggataaaggtaattgaagaaaaaa-gctagctag 767
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3598 tcaagattcagacctggtgataatttggataaaggtaattgaagaaaaaaggctagctag 3539
Query: 768 tttccaccgcatacaggaagaggaaaagatacgagatacaagaatctcatcacaatagtg 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3538 tttccaccgcatacaggaagaggaaaagatacgagatacaagaatctcatcacaatagtg 3479
Query: 828 gcagtccgagcaccacaagatgaatatnatacactactgtatcattattatggnnctgaa 887
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 3478 gcagtccgagcaccacaagatgaatataatacactactgtatcattattatggtctgaaa 3419
Query: 888 cggagacataggcgtcagcattcgttt 914
|||||||||||||||||||||||||||
Sbjct: 3418 cggagacataggcgtcagcattcgttt 3392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,545
Number of Sequences: 1807
Number of extensions: 12545
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)