BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZH12RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1358                                                        1641   0.0  

>3x_Contig1358 
          Length = 7912

 Score = 1641 bits (828), Expect = 0.0
 Identities = 886/901 (98%), Gaps = 4/901 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   taaagaaat-aatgcagatttcaatgttataactggagtccatgcattctttaatatatc 105
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471 taaagaaatcaatgcagatttcaatgttataactggagtccatgcattctttaatatatc 7412

                                                                        
Query: 106  aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7411 aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 7352

                                                                        
Query: 166  catttggggtggtttatacggatattccacgggtatatttatatcaacgatttatttacc 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 7351 catttggggtggtttatacggatattccacgggtatatttatatcaacgacgaatttacc 7292

                                                                        
Query: 226  tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 7232

                                                                        
Query: 286  ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 7172

                                                                        
Query: 346  cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 7112

                                                                        
Query: 406  tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 7052

                                                                        
Query: 466  atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 6992

                                                                        
Query: 526  tcgtttgcatacagtatcatcaatgttaatggtatttgatataagaagtagaaactggtg 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6991 tcgtttgcatacagtatcatcaatgttaatggtatttgatataagaagtagaaactggtg 6932

                                                                        
Query: 586  atgagggtaacaaagacatgtttccctttcaacataactgagttaaacatcacctataag 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6931 atgagggtaacaaagacatgtttccctttcaacataactgagttaaacatcacctataag 6872

                                                                        
Query: 646  attatagtacattggtatatactggttcgttgtgtatattagatagaaggttcacgtatt 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6871 attatagtacattggtatatactggttcgttgtgtatattagatagaaggttcacgtatt 6812

                                                                        
Query: 706  atgtggttgaagaggaagcangaagttgactttcatcgtcttgttccgcgaagtgcaaga 765
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6811 atgtggttgaagaggaagcaggaagttgactttcatcgtcttgttccgcgaagtgcaaga 6752

                                                                        
Query: 766  atgtgtgatctcccatctttcttggagtgataatcaatttaatgacanatattacaccga 825
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6751 atgtgtgatctcccatctttcttggagtgataatcaatttaatgacaaatattacaccga 6692

                                                                        
Query: 826  acaagattgcaataccggncacgattaggtatactattccctagcgacatgttttttgcc 885
            |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||| ||||
Sbjct: 6691 acaagattgcaataccggccacgataaggtatacta-tccctagcgacatg-tttctgcc 6634

                                                                        
Query: 886  accgataatactatttgttgtcaagattaaggatttacttccttccaaagatctgtactg 945
            |||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||
Sbjct: 6633 accgataatactatttgttgtcaagatgtaagatttacttcc-tccaaagatctgtactg 6575

             
Query: 946  g 946
            |
Sbjct: 6574 g 6574


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6886
Number of Sequences: 1807
Number of extensions: 6886
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)