BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA02FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1513 0.0
>3x_Contig1168
Length = 4574
Score = 1513 bits (763), Expect = 0.0
Identities = 847/865 (97%), Gaps = 8/865 (0%)
Strand = Plus / Plus
Query: 89 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 aaagcatagccttgaattaatgggctacattgtcattcaaagaaaactgttcttttttaa 1603
Query: 149 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1604 atataataattctgcctgtatttactagtcatatgcacctcaatgttttggcaagtatat 1663
Query: 209 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1664 caatatagaggacgccgtggccaggtttagaggcgcatgctactctgctcttctatctga 1723
Query: 269 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1724 tcaacttgcattacattttacagtcacttctgacgtgtccgttgccattcattgggattt 1783
Query: 329 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1784 gactgtttggttaaagacacttttaatataataataacaaaatatataaaattataaggt 1843
Query: 389 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1844 ttgaccaaagaatgatgcatcagtaccgagataaggaagaacatcaagacaaactgcccc 1903
Query: 449 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1904 tctgaaacttgacttatcggcatagaaaaaaaacagccatgtcgttgccattgaggccct 1963
Query: 509 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1964 tgtctctagatgtgaacacaaagcagctagattctaaacagaagaagttccaccaggctg 2023
Query: 569 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 tggaaagggcattgcaacatttcgatgctgtcacggaatgggctgactatatcagcagct 2083
Query: 629 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 taggaaagcttctcaaggctttacaaagttggtctcctaaattccagaatgttaaatact 2143
Query: 689 acgttccatatccttatcangttgctagaagattgtcttcatcattatcttcaaacttac 748
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 2144 acgttccatatccttatcaggttgctagaagattgtcttcatcattatctccaaacttac 2203
Query: 749 cttcaggagttcatttgaaaacattataggntttataattacatttttgagaagattggg 808
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 2204 cttcaggagttcatttgaaaacattagagg-tttataattacatttttgagaagattggg 2262
Query: 809 cccgacacttttggggaaggaagtgaatattttnataggtggcgttctacccttga-gtc 867
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 2263 cccgacac-tttggggaaggaagtgaatatttggataggtggcgttctacccttgatgtc 2321
Query: 868 ttatgcgttcatatc-gtttaacattcattga-tgaactgt-tgagaaatac-ttgtaag 923
|||||||| |||||| ||| ||||| |||||| |||||||| |||||||||| |||||||
Sbjct: 2322 ttatgcgtccatatcggttaaacatccattgattgaactgtatgagaaatacattgtaag 2381
Query: 924 tctatcttttggtac-ttgaaaatt 947
|||||||| || ||| |||||||||
Sbjct: 2382 tctatcttctgttacgttgaaaatt 2406
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7503
Number of Sequences: 1807
Number of extensions: 7503
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)