BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1626 0.0
>3x_Contig1168
Length = 4574
Score = 1626 bits (820), Expect = 0.0
Identities = 859/870 (98%), Gaps = 2/870 (0%)
Strand = Plus / Minus
Query: 51 gcttcccccaaatgatattagtttttacagaatcaaagaaagaagacgctgttttcaata 110
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3265 gcttcccccaaatgatattagtttcgacagaatcaaagaaagaagacgctgttttcaata 3206
Query: 111 ctaattgattgtccgagtactctctgcatttctcgataagtgggatgaatattttcggtg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 ctaattgattgtccgagtactctctgcatttctcgataagtgggatgaatattttcggtg 3146
Query: 171 ttaaataagatccaatttgccagcgatccatcaacgcagacacgattttgtaagctttga 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 3145 ttaaataagatccaatttgccagcgatccatcaacgcagacacgattttgtaagcatcga 3086
Query: 231 tgcacgtctgagggtgttcgagcatctcatgcaatccgcctaacaaatgttgagcaccgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tgcacgtctgagggtgttcgagcatctcatgcaatccgcctaacaaatgttgagcaccgt 3026
Query: 291 tcttgataaaatactcggaatcgctatgatctccagattctggatctagtactggtccaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 tcttgataaaatactcggaatcgctatgatctccagattctggatctagtactggtccaa 2966
Query: 351 gcagccagttccatattcttctattgagagacatgtcttttttcaacattgttctgcatg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 gcagccagttccatattcttctattgagagacatgtcttttttcaacattgttctgcatg 2906
Query: 411 ccgtcatgattaagagccgacagtcggaaggtttaactaacacttgcaacaatggtgaat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 ccgtcatgattaagagccgacagtcggaaggtttaactaacacttgcaacaatggtgaat 2846
Query: 471 gcaaatgcaacctttgcaaaagtaagtccaaaatacctctttggattaggatttcgttct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2845 gcaaatgcaacctttgcaaaagtaagtccaaaatacctctttggattaggatttcgttct 2786
Query: 531 catcttcaagacatctaacaaaagatcttattagcaaacctggctcgggtgaaactactg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2785 catcttcaagacatctaacaaaagatcttattagcaaacctggctcgggtgaaactactg 2726
Query: 591 gtttggaggcatcgagtaacaacgacaaagcaaattctttcctctccttcgaatcctttt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2725 gtttggaggcatcgagtaacaacgacaaagcaaattctttcctctccttcgaatcctttt 2666
Query: 651 tagttaaagctgtgtccttttcctttgcagctaaatgaggaactgcatttaacgatggta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2665 tagttaaagctgtgtccttttcctttgcagctaaatgaggaactgcatttaacgatggta 2606
Query: 711 actttttcgtcaaccacactagaccgcccaatcttctatctttattattgattataataa 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2605 actttttcgtcaaccacactagaccgcccaatcttctatctttattattgattataataa 2546
Query: 771 tgaaagaagtttgccaaaataaagagggatcatctagattagtgttaagagtctctatca 830
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2545 tgaaagaagtttgccaaaataaagagggatcatctagattagtgtaaagagtctctatca 2486
Query: 831 aatttatggtacttgcttgcgactcactacttttcgtcgtcgatccctggggacanactt 890
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct: 2485 aatttatggtacttgcttgcgactcactac-tttcgtcgtcgatccctgggaacaaactt 2427
Query: 891 gcncacacaggttttcactataattttcaa 920
|| ||||||| ||||||||||||||||||
Sbjct: 2426 gccaacacagg-tttcactataattttcaa 2398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6770
Number of Sequences: 1807
Number of extensions: 6770
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)