BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1645 0.0
>3x_Contig1801
Length = 57606
Score = 1645 bits (830), Expect = 0.0
Identities = 862/869 (99%), Gaps = 3/869 (0%)
Strand = Plus / Minus
Query: 87 ttatcgaatctggataatgagaacggtgacgcggacgatgcagatctatttgaggaagaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50434 ttatcgaatctggataatgagaacggtgacgcggacgatgcagatctatttgaggaagaa 50375
Query: 147 cccgaggaacaaaaccctgctaatgaagcatccgaatctgatttgttgaaatccccatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50374 cccgaggaacaaaaccctgctaatgaagcatccgaatctgatttgttgaaatccccatct 50315
Query: 207 aaagaagacgatactaccgcagcaggtaatgaggaacaagaacaagaacaagaacaagaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50314 aaagaagacgatactaccgcagcaggtaatgaggaacaagaacaagaacaagaacaagaa 50255
Query: 267 caggacgaacaaatggataaagagaatgacgaaatcgcgttgccagaaactaaaaaggaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50254 caggacgaacaaatggataaagagaatgacgaaatcgcgttgccagaaactaaaaaggaa 50195
Query: 327 agcgattcgaacggcgaggggaacaatgaccctgttggaaatatagaaactgaacagagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50194 agcgattcgaacggcgaggggaacaatgaccctgttggaaatatagaaactgaacagagc 50135
Query: 387 gaggtagaacctgcacagaacgaactggaaactgccaatgacaaacaagagccagcacca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50134 gaggtagaacctgcacagaacgaactggaaactgccaatgacaaacaagagccagcacca 50075
Query: 447 gaaccagaatcatttactgaaaaccccaaattaccagacgtgaaggacttagggcagccc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50074 gaaccagaatcatttactgaaaaccccaaattaccagacgtgaaggacttagggcagccc 50015
Query: 507 gattctggtatagatgctccagtacatactacaacagagacaacagttgatgaagaaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50014 gattctggtatagatgctccagtacatactacaacagagacaacagttgatgaagaaatt 49955
Query: 567 gataaagagcacaatactgaagcagaagcagaacctgaagtagatagtattcttgaacaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49954 gataaagagcacaatactgaagcagaagcagaacctgaagtagatagtattcttgaacaa 49895
Query: 627 gaatcgagatcagcttctcctgaatcaaatataaccgtaaagcaagaaagtaatactgct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49894 gaatcgagatcagcttctcctgaatcaaatataaccgtaaagcaagaaagtaatactgct 49835
Query: 687 gatccaaaattatttgtaccgcaatcccatgaaattgtaatcccttcatactcgaagtgg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49834 gatccaaaattatttgtaccgcaatcccatgaaattgtaatcccttcatactcgaagtgg 49775
Query: 747 tttaatttgaccaaagttcatgaaatcgaagtgaaatctttaccggaattcttcacttat 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 49774 tttaatttgaccaaagttcatgaaatcgaagtgaaatctttaccggaattcttcactaat 49715
Query: 807 agaataccttcaaa-acaccccagatgtacgtcaaatatcgtaacttcatggtaaactct 865
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49714 agaataccttcaaagacaccccagatgtacgtcaaatatcgtaacttcatggtaaactct 49655
Query: 866 tatagactaaatcc-aatgaatactttacagtcactgcagctagaagaaacc-ttgtgga 923
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 49654 tatagactaaatccaaatgaatacttcacagtcactgcagctagaagaaacctttgtgga 49595
Query: 924 gacgcnggcgccctcttcaaactacataa 952
||||| ||||||||||||| |||||||||
Sbjct: 49594 gacgcgggcgccctcttcagactacataa 49566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7576
Number of Sequences: 1807
Number of extensions: 7576
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)