BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA06FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1576 0.0
>3x_Contig1536
Length = 11572
Score = 1576 bits (795), Expect = 0.0
Identities = 845/857 (98%), Gaps = 4/857 (0%)
Strand = Plus / Minus
Query: 91 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7257 taacctcctcgtcgtcaacaaacattttagaagaggtaagtttattagtaaaactggaag 7198
Query: 151 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7197 ggttcgcaattagggtcgtgttgaaaaaagatggtctaggatttacattctcctcaatat 7138
Query: 211 tcgaaaggaacagatagtcagcatgactgctatgtttcttcttggaggctttgagactgc 270
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7137 tcgaaaggaacagagagtcagcatgactgctatgtttcttcttggaggctttgagactgc 7078
Query: 271 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7077 ggctcgcatctatggatgacactttcccatcagagatggatctggctctttttttgcctg 7018
Query: 331 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7017 aaacttgcgatttggtcgacctctgcttggtaactttggaagtgttcttcgctccagctt 6958
Query: 391 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6957 tgacattggaagggcggccagttttcttaattttcgtcgaatgaatatccgccttgacct 6898
Query: 451 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6897 ggtccttcttcgaaacgcgccttttcgattttacttccgctagtttatcttcctcgtcgc 6838
Query: 511 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6837 tctcaactcttgcaggtttccgacgttctcttagaaatgtcatgggaagaaaatactcac 6778
Query: 571 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6777 tgcgcatatcatacttcatagactcttcaattaaagccatagtactcttcgtcatacgct 6718
Query: 631 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 taccttgagtgtcaccttcattcatgggtgtattatcccttgtattatcccttgtattat 6658
Query: 691 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 cccttgtgctatccaccgaatgcatattggagaacaccgatgcatcagagctcgtggcct 6598
Query: 751 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgacc 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 cagttgacatctccttcgtatgcgttctcaaacgtaactaaaacaaacgaaattatgacc 6538
Query: 811 tttatttcatggaacaatttgtacatcaatgcaataaccagtggtcaagcaatccgttac 870
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 -ttatttcatggaacaa-ttgtacatcaatgcaataaccagtggtcaagcaatccgttac 6480
Query: 871 agagtgaattagatcgcttcaacacaagaaagtattgttcgntactttctttcttgttgn 930
||||||||| ||||| | ||||||||||| ||| |||||| |||||||||||||||||
Sbjct: 6479 agagtgaataggatcgttccaacacaagaaggta-tgttcgttactttctttcttgttgt 6421
Query: 931 atgtggggttggttggt 947
|||| ||||||||||||
Sbjct: 6420 atgt-gggttggttggt 6405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5543
Number of Sequences: 1807
Number of extensions: 5543
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)