BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA06RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 1592 0.0
>3x_Contig1701
Length = 10926
Score = 1592 bits (803), Expect = 0.0
Identities = 877/895 (97%), Gaps = 5/895 (0%)
Strand = Plus / Minus
Query: 39 gcttctgcttgtgttggtaaactgtctcaactatacaaaagactttttttcgtatgaaat 98
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1105 gcttctgcttgtgttggtaaactg-ctcaactatacaaaagacttttttttgtatgaaat 1047
Query: 99 tctatgcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tctatgcaggaaggtgaataaacgttgttgaacattgttcgagcaatattcccctgcagt 987
Query: 159 aaaatatagaggcgtagaaaagcatatagaaggtgcgaagtgttgttggcgccctttttt 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 986 aaaatatagaggcgtagaaaagcatatagaaggtgcgaagtgttgttggcgccccagttt 927
Query: 219 cgcctgtggacactgtgaacaattttaagatgacggtaaataaaaaagatgaaaataaaa 278
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 926 cgcctgtggacactgtgaacaattttaagatgacggtaaaaaaaaaagatgaaaataaaa 867
Query: 279 cacgaaaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cacgaaaaagcaaaagcgaaccctgaaaagattacaaataatgttcctgatccagcagtg 807
Query: 339 gataagatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaag 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gataagatccctgctataggctcagctactgtctcttatcaattagaagtaatgtccaag 747
Query: 399 ttcgcggacttcgctttatttacgggatgctattaaacagcaatataactaacccaatta 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttcgcggacttcgctttatttacgggatgctattaaacagcaatataactaacccaatta 687
Query: 459 tcaaggcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcaaggcaatagcaccataaacgactgagacgtagttcatgttggaagaggtaactggtt 627
Query: 519 tcacataagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcacataagggaaagacaacataacaacacaaaacaatgcgtatgctactgttagtgtat 567
Query: 579 gtgggatcacaccccattttttaagccacatggagtatttatttggtacaatatccgtct 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgggatcacaccccattttttaagccacatggagtatttatttggtacaatatccgtct 507
Query: 639 catttgcagtttccctttcacactttgcaataaatttgttcctgcctctaaccagtaaaa 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catttgcagtttccctttcacactttgcaataaatttgttcctgcctctaaccagtaaaa 447
Query: 699 tcaaactaggaatagcatatgacacaattaaaagcgtcactgcagcagatacgatagcat 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaaactaggaatagcatatgacacaattaaaagcgtcactgcagcagatacgatagcat 387
Query: 759 tgaaagccttagtactgcccaacataatgcatccaatgatcacgactagtgcttgtggag 818
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 tgaaagccttagtactgcccaacataatgcatccaatgatcacgactagtgcttgt-gag 328
Query: 819 aag-agtgcgcatataaaggaac-ttgttgacggaatcgatagttgcaaacctaactgtt 876
||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 327 aagaagtgcgcatataaaggaactttgttgacggaatcgatagttgcaaacctagctgtt 268
Query: 877 acaaatccggaataggttccattttgccccatggttt-catttctttcgatagcg 930
||||||||||| || |||||| | ||| |||||||| ||||||| |||||||||
Sbjct: 267 acaaatccggataagattccatctggcctcatggtttccatttctctcgatagcg 213
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6253
Number of Sequences: 1807
Number of extensions: 6253
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)