BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA08FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1429 1562 0.0
>3x_Contig1429
Length = 8041
Score = 1562 bits (788), Expect = 0.0
Identities = 864/884 (97%), Gaps = 5/884 (0%)
Strand = Plus / Plus
Query: 89 aatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaacaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3761 aatcagaaagatgatgatgatgacgaatatattagaaaagttcgtacagctgtagaacaa 3820
Query: 149 ttcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaaaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3821 ttcgaaaaggcaggcttcttcgaggatttagacgatactaaaaagggttcaaaaacaaaa 3880
Query: 209 gccatggtatataagctagcagacgaggtgatagcccgacataaagacaaactcttacgc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3881 gccatggtatataagctagcagacgaggtgatagcccgacataaagacaaactcttacgc 3940
Query: 269 ataagagacccaaattatgataagtgg-tctgaaccattaaaaacccccatgatagataa 327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3941 ataagagacccaaattatgataagtgggtctgaaccattaaaaacccccatgatagataa 4000
Query: 328 atatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 atatcatgaaatcaaagaagaatggagacgtgaggaaacgaaccacggttccagtagttt 4060
Query: 388 aaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcatcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 aaacaacagttcaatgactacacagaatgttacatttgcatggagttcaaatgctcatcg 4120
Query: 448 accggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaacaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 accggagctgaccgcaccaaagaagcctttggaaccgcattccaataagaaatcaacaaa 4180
Query: 508 tgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaattct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 tgaaatactacggagtaaagcaatgaaaagcgctcatgaattaagaagtaagcaaattct 4240
Query: 568 gctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgatga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 gctcaataaactgcgggataaaaatgatagaaacaatctgccttcacaggatggtgatga 4300
Query: 628 tgtcaagccgaaatttaaaatggatcccttggaaccatttgtcgccaaagctttaccgag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 tgtcaagccgaaatttaaaatggatcccttggaaccatttgtcgccaaagctttaccgag 4360
Query: 688 agagaagaagaagcgaccaaaggagaaaaggaagagcanattttggttttggggatccct 747
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4361 agagaagaagaagcgaccaaaggagaaaaggaagagcaaattttggttttggggatccct 4420
Query: 748 tacccatcatactgacganagaaaccacagagacanagctaggtcgccagagcttgaaga 807
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4421 tacccatcatactgacgaaggaaaccacagagacaaagctaggtcgccagagcttgaaga 4480
Query: 808 ttattaaatt-gtgttgtatcaccgaattcgcggt-ccccacgttatcgatttctttctc 865
|||| ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 4481 ttataaaattggtgttgtatcaccgaattcgcggtcccccacgttatcgattcctttctc 4540
Query: 866 tgatcccgat-acactcagactatttacaatnacgcagtatcggacaacatt-accatca 923
|||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct: 4541 tgatcccgataacactcagactattaccaataacgcagtatcggacaacattaaccatca 4600
Query: 924 ccttgtgcttatagacctcgacgatgacgaggaaccctttaagt 967
||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct: 4601 cctgtcgctaatagacctcgacgatgacgaggaacacttaaagt 4644
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7680
Number of Sequences: 1807
Number of extensions: 7680
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)