BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA08RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1678 1620 0.0
>3x_Contig1678
Length = 12472
Score = 1620 bits (817), Expect = 0.0
Identities = 856/868 (98%), Gaps = 1/868 (0%)
Strand = Plus / Minus
Query: 49 attcgaacctttgtaaattttttaggataaagatgaaagcttccttcttacaatggtacc 108
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 attcgaacctttgtaaatgtcataggataaagatgaaagcttccttcttacaatggtacc 1698
Query: 109 gttattcaaaaaggttctcacgatagctgcatattctttactatcatgttgaatgttatc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 gttattcaaaaaggttctcacgatagctgcatattctttactatcatgttgaatgttatc 1638
Query: 169 aaaagcatttaagagggcaggtgtattgatttccagttcaacttcgtacgttgtatcaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 aaaagcatttaagagggcaggtgtattgatttccagttcaacttcgtacgttgtatcaga 1578
Query: 229 ttcaggttctttttcatttttgttattgactctaataggtttattttccaccctagtgat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 ttcaggttctttttcatttttgttattgactctaataggtttattttccaccctagtgat 1518
Query: 289 atcaaatctggtacaagagtcattatggatgtaactggtacgtttctttaaacgatgacc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 atcaaatctggtacaagagtcattatggatgtaactggtacgtttctttaaacgatgacc 1458
Query: 349 tgttggagtatggttcttgtacttttcaggtggatcattttcgggtacaggcagttccaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 tgttggagtatggttcttgtacttttcaggtggatcattttcgggtacaggcagttccaa 1398
Query: 409 actgattgaaatcttggtatcataactatcctttggggagtacaataaaatctgtgaaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 actgattgaaatcttggtatcataactatcctttggggagtacaataaaatctgtgaaat 1338
Query: 469 tttccgtttttcaataaattgtgcaattcttccggtgttaacatctcttgtcattctcaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 tttccgtttttcaataaattgtgcaattcttccggtgttaacatctcttgtcattctcaa 1278
Query: 529 aaacttcggcctttccgtatgagttcttactctatagctcaagtctgaggcatgagaatc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 aaacttcggcctttccgtatgagttcttactctatagctcaagtctgaggcatgagaatc 1218
Query: 589 tattatattaaactttcccatattttcatttaattcagataagttctttatgtatctgtt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 tattatattaaactttcccatattttcatttaattcagataagttctttatgtatctgtt 1158
Query: 649 gaactcatcaaaaactctttcatcaacatccggcttcattgtggagtcaagatctgtgaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 gaactcatcaaaaactctttcatcaacatccggcttcattgtggagtcaagatctgtgaa 1098
Query: 709 aacgcattgagaggacaccggagggttaacacgattagaggtcgatggatcaatgataag 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 aacgcattgagaggacaccggagggttaacacgattagaggtcgatggatcaatgataag 1038
Query: 769 accgtatttcatttccacttcaatgaattgcctttagttccggttctactgncatcaacg 828
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 1037 accgtatttcatttccacttcaatgaattgcc-ttagttccggttctactgcaatcaacg 979
Query: 829 tagcataaatccaatcttggacggattttgtcagttcatcttctggaattaatcctaaat 888
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 978 tagcataaatccaatcttggacggattttgtcaagtcatcttctggaataaatcctaaaa 919
Query: 889 taaagtcgccaagtttaagatttgaaga 916
|| ||||| |||||||||||||||||||
Sbjct: 918 tagagtcgtcaagtttaagatttgaaga 891
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8060
Number of Sequences: 1807
Number of extensions: 8060
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)