BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA09FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1092 0.0
3x_Contig1700 109 1e-23
>3x_Contig1738
Length = 21411
Score = 1092 bits (551), Expect = 0.0
Identities = 600/613 (97%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 87 ctgaacatacatgtataagatgaagaaactgacctgggtaccattaatcatttgagcaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9141 ctgaacatacatgtataagatgaagaaactgacctgggtaccattaatcatttgagcaat 9082
Query: 147 atctgcgggttgattctttctcctgcaatgttccaaaaatgattttctaaatagttcaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9081 atctgcgggttgattctttctcctgcaatgttccaaaaatgattttctaaatagttcaaa 9022
Query: 207 ctgtttggtgtttaattcctgaccgactttccgttgaatggctggatctagattttgtag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9021 ctgtttggtgtttaattcctgaccgactttccgttgaatggctggatctagattttgtag 8962
Query: 267 aacgtttctttggttattagactgattctgtacttgaggcgcatgttgttgcattctcgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8961 aacgtttctttggttattagactgattctgtacttgaggcgcatgttgttgcattctcgc 8902
Query: 327 ctgtgcttgcgcttgtgcttgtatgtgcgcttgagcttgggcttgagcttgagcctgtgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8901 ctgtgcttgcgcttgtgcttgtatgtgcgcttgagcttgggcttgagcttgagcctgtgc 8842
Query: 387 ttgtgcttgtgcttgggcttgagcttgagcttgtgcttgagcctgtgcctgcgcttgagc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8841 ttgtgcttgtgcttgggcttgagcttgagcttgtgcttgagcctgtgcctgcgcttgagc 8782
Query: 447 ctgtgcttgttgctgctgttgtcttagtttctgctgctgtaattggttgaatgcctgctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8781 ctgtgcttgttgctgctgttgtcttagtttctgctgctgtaattggttgaatgcctgctg 8722
Query: 507 ttgttgcaacatctgtagcttttgttgctgttgctgntgcctctgttgatgcgcagcaat 566
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 8721 ttgttgcaacatctgtagcttttgttgctgttgctgttgcctctgttgatgcgcagcaat 8662
Query: 567 tattgcngctctatccatatactgagggctctgtctactaccactcccctgagctaaaga 626
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 8661 tattgcggctctatccatatactgagggctctgtctactagcactcgcctgagctaaaga 8602
Query: 627 ctcatcggccattgttaggggattcactttggcacatttttcggcgtttccaccttgcga 686
|||||||||||||| |||||||| ||| |||||||||||| ||||| |||||| |||||
Sbjct: 8601 ctcatcggccattg-taggggatccac-ttggcacattttgcggcg-ttccacgctgcga 8545
Query: 687 taacttttgctgt 699
|||| | ||||||
Sbjct: 8544 taacatctgctgt 8532
>3x_Contig1700
Length = 16332
Score = 109 bits (55), Expect = 1e-23
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 355 gcttgagcttgggcttgagcttgagcctgtgcttgtgcttgtgcttgggcttgagcttga 414
|||||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 11502 gcttgagcctgggcttgagcttgagcctgggcttgagcttgagcctgggcttgagcttga 11443
Query: 415 gcttgtgcttgagcctgtgcctgcgcttgagcctg 449
|| |||||||| ||||| ||||| || ||||||||
Sbjct: 11442 gcctgtgcttgtgcctgcgcctgagcctgagcctg 11408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6622
Number of Sequences: 1807
Number of extensions: 6622
Number of successful extensions: 155
Number of sequences better than 1.0e-20: 2
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)