BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA09RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1563 1215 0.0
>3x_Contig1563
Length = 10839
Score = 1215 bits (613), Expect = 0.0
Identities = 732/763 (95%), Gaps = 8/763 (1%)
Strand = Plus / Minus
Query: 48 attgcaactgaaaaaaa--tatcaaactcagatcgctcattccgtacagaggaacaaggt 105
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8192 attgcaactgaaaaaaaattatcaaactcagatcgctcattccgtagagaggaacaaggt 8133
Query: 106 ctaaatgatgacattaatcattgctagttaacttgtgcttattcttggattttaaacatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 ctaaatgatgacattaatcattgctagttaacttgtgcttattcttggattttaaacatt 8073
Query: 166 tctttggaagtcttgaagctaaaggaaaaaaaaaactaaacacagttatgtttattttaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 8072 tctttggaagtcttgaagctaaaggaaaaaaaaaactaaacacagttatgtctactttaa 8013
Query: 226 acgttttgagatactctgctttagctctaggtgttgttgccggtttcaagactgacttgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 acgttttgagatactctgctttagctctaggtgttgttgccggtttcaagactgacttgt 7953
Query: 286 ctttgaagtcagaagctcaaaagcaagaagaacaaaaccaattgcacgctcaattgaaat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7952 ctttgaagtcagaagctcaaaagcaagaagaacaaaaccaattgcacgctcaattgaaat 7893
Query: 346 tagtggaacaagccaaggcagaatacgccaagttgcacccaccaaagaaggaaattaagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7892 tagtggaacaagccaaggcagaatacgccaagttgcacccaccaaagaaggaaattaagg 7833
Query: 406 ctgctactgctggttcttctgccaagattgatttggaggaccctaacttggattatgctt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7832 ctgctactgctggttcttctgccaagattgatttggaggaccctaacttggattatgctt 7773
Query: 466 cggtcatcttgagcgctgttgaatccttgaagcaataagcaacaggacttatgaaataag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7772 cggtcatcttgagcgctgttgaatccttgaagcaataagcaacaggacttatgaaataag 7713
Query: 526 gagaggtgtgtttaattcttcttttttctc-tttgngtaacaagggaaaggaacttgtat 584
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 7712 gagaggtgtgtttaattcttcttttttctcttttgtgtaacaagggaaaggaacttgtat 7653
Query: 585 gcataacttcgagctgaagcataatagaaaaataaaaggttggattctctgtttgaattc 644
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7652 gcataactccgagctgaagcataatagaaaaataaaaggttgtattctctgtttgaattc 7593
Query: 645 tgggagtcaacaggaaatgatgacaaccagagttttttttgcttttctcgactaagaaac 704
||| |||||||| |||||||||||||| |||||| | | |||||| |||||||||| |||
Sbjct: 7592 tggtagtcaacaagaaatgatgacaacaagagttatatctgctttcctcgactaag-aac 7534
Query: 705 caaagacctcacgaatcctttttttttgttacaattagatttacacgccatttcaattac 764
||||||||||||||||| ||||||||||||| |||||||||||| |||| | |||| ||
Sbjct: 7533 gaaagacctcacgaatcc-ttttttttgttacgattagatttaca-gccaatacaataac 7476
Query: 765 ctattaaggaagaaacactccaaaaaaaaagaaaattttatat 807
||| || ||||||||| |||||||||||||| ||| |||||
Sbjct: 7475 atatgaa-gaagaaaca-gccaaaaaaaaagaagattctatat 7435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,735
Number of Sequences: 1807
Number of extensions: 11735
Number of successful extensions: 150
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)