BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZA12FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig596 1503 0.0
>3x_Contig596
Length = 2286
Score = 1503 bits (758), Expect = 0.0
Identities = 824/837 (98%), Gaps = 7/837 (0%)
Strand = Plus / Minus
Query: 87 ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttaagttaagaagtaccactaaatggcccaacttgttttgaagattttcattgctgagca 895
Query: 147 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tatcaacaaatgacttagcgacttcgttaaaaattcttaattcaatagaaagatcagcag 835
Query: 207 atgctaacgtcattttcttctggtgtgatagtctcaatatcgccctgaagattatggaaa 266
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atgctaacgtcattttcctctggtgtgatagtctcaatatcgccctgaagattatggaaa 775
Query: 267 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgcaggactgcgtggtatggaacaaaaacctgttctgaagagtatttttgaacttagcag 715
Query: 327 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ccgtgttgtcggttttcacatcattttcagctttagcccccttataaagtagtaaagaag 655
Query: 387 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gagtttcgggggatgtcgccggtcttgtttgttctgaaactatgattggcaagcatccac 595
Query: 447 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggatgtaatactcttccaacgcacacctttcaaaagttgtccttaaaagatggatcaaag 535
Query: 507 aaaacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaaacccgttctcgtcaaagtattcgagtatttgatgaactctttccggaaacaatgaaa 475
Query: 567 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagatattcacttttc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agcggtcaatgtacacagaggtaattgtggatacaatgacttgtaagatattcacttttc 415
Query: 627 gaagcgtattttccacagtatctggatccaagctcaaaacatatgacttgtcctgatcgt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaagcgtattttccacagtatctggatccaagctcaaaacatatgacttgtcctgatcgt 355
Query: 687 aattgatgaagtcagaaagatcatccaaagtatattttaaaagtgctaataaggtaggta 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aattgatgaagtcagaaagatcatccaaagtatattttaaaagtgctaataaggtaggta 295
Query: 747 gggcatattttgctatcttcgtcatcgaacgtctttagagcatcagtgaaagtttaag-a 805
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 294 gggcata-tttgctatcttcgtcatcgaacgtctttagagcatcagtg-aagtttaagaa 237
Query: 806 gcactgcgaatcgat-ttattataggcggnccttttccggga-tatcacagaaaacaact 863
||||||||||||||| | || |||||||| || ||||||| | |||||||||||||||||
Sbjct: 236 gcactgcgaatcgatataatcataggcgggcc-tttccggaattatcacagaaaacaact 178
Query: 864 ttttaggatcaatcttttttgagagtaa-ggaacccaggaaacgttttccataattc 919
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 177 ttttaggatcaatcttttttgagagtaatggaacccaggaaacgttttccatcattc 121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7024
Number of Sequences: 1807
Number of extensions: 7024
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)