BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC15ZA12RM1.SCF screened BAC_end (948 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig903 1394 0.0 >3x_Contig903 Length = 4000 Score = 1394 bits (703), Expect = 0.0 Identities = 791/811 (97%), Gaps = 7/811 (0%) Strand = Plus / Minus Query: 49 tccctagattcattaccgattcctgtggttgtcagtaagacaaattgcttcaaaatgtat 108 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 2674 tccctagattcattaccgacccctgtggttgtcagtaagacaaattgcttcaaaatgtat 2615 Query: 109 ttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggattgcgc 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2614 ttgtgttgagttgccaattgttcgttttgactcaattgttcttcgagcacgggattgcgc 2555 Query: 169 ttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgagttttttgcataat 228 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2554 ttgatctcttgtaaaaggagttctagcaaatcttggttctgctcgagttgcgtgcataat 2495 Query: 229 acagttgataccttgcttgtacgagcaagcctttcgaaaaattcgattgggaatttctca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2494 acagttgataccttgcttgtacgagcaagcctttcgaaaaattcgattgggaatttctca 2435 Query: 289 ttcttcaataatgttctgatttgctctatctcttctgttggcatctcatcgtatgaacca 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2434 ttcttcaataatgttctgatttgctctatctcttctgttggcatctcatcgtatgaacca 2375 Query: 349 ataacaatccttctgaccctctttcccaactgtaacttgctccatatcagtcttgccact 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2374 ataacaatccttctgaccctctttcccaactgtaacttgctccatatcagtcttgccact 2315 Query: 409 actattcccgcgatggaattgaaaagccaaagtggtaatattgggaatagttcaaatgca 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2314 actattcccgcgatggaattgaaaagccaaagtggtaatattgggaatagttcaaatgca 2255 Query: 469 aggaaaaggaaaaagccactgcgaccagtgacagttgatatgatccattggaaaatgacc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2254 aggaaaaggaaaaagccactgcgaccagtgacagttgatatgatccattggaaaatgacc 2195 Query: 529 cgtggtgattcccatccaatgttcatccgcgctagtatgccgccagctggttgatttgta 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2194 cgtggtgattcccatccaatgttcatccgcgctagtatgccgccagctggttgatttgta 2135 Query: 589 gctccagtttcagcattggggttaggcaagtcgggaagtagttcttcgtctacattatac 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2134 gctccagtttcagcattggggttaggcaagtcgggaagtagttcttcgtctacattatac 2075 Query: 649 tgtacttcattgcgttgaatctttttgccaagagcgttttctatcgctgctcttgcagtt 708 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2074 tgtacttcattgcgttgaatcttttcgccaagagcgttttctatcgctgctcttgcagtt 2015 Query: 709 ccagacaacttcatacatttctctcccaaagtgattttcgt-cttagagagccttaaggt 767 ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct: 2014 ccagacaacttcatacatttctctcccaaggtga-tttcgtccttagagagccttaaggt 1956 Query: 768 cttgtcggcccatttgtagcttcgaattactgtgcggccaactggggactgtggtattat 827 |||||| ||| ||||||||| ||||| ||||| |||||||||| | ||||||||||| || Sbjct: 1955 cttgtc-gccaatttgtagc-tcgaaatactgggcggccaact-gtgactgtggtataat 1899 Query: 828 gtagtctttgaacgtcttacagttatgcgtt 858 |||||| |||| |||| |||||||||||||| Sbjct: 1898 gtagtc-ttgatcgtc-tacagttatgcgtt 1870 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6389 Number of Sequences: 1807 Number of extensions: 6389 Number of successful extensions: 34 Number of sequences better than 1.0e-20: 1 length of query: 948 length of database: 10,358,551 effective HSP length: 16 effective length of query: 932 effective length of database: 10,329,639 effective search space: 9627223548 effective search space used: 9627223548 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)