BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB02FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1604 0.0
>3x_Contig1668
Length = 13429
Score = 1604 bits (809), Expect = 0.0
Identities = 872/887 (98%), Gaps = 5/887 (0%)
Strand = Plus / Minus
Query: 86 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8004 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 7945
Query: 146 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7944 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 7885
Query: 206 tcttcacagttactcttcaatgctaatggtactgtttcgactggtacaggatcttcaggc 265
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7884 tcttcacagttac-caacaatgctaatggtactgtttcgactggtacaggatcttcaggc 7826
Query: 266 tccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 tccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaa 7766
Query: 326 gaaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttcta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 gaaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttcta 7706
Query: 386 agtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 agtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagca 7646
Query: 446 aaagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 aaagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaac 7586
Query: 506 ttcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 ttcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaatt 7526
Query: 566 tagcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7525 tagcacattttcggttctttgtcagatcaaagattctattgccaatagaaaccctttcac 7466
Query: 626 tgcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacagaaagccta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7465 tgcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaacagaaagccta 7406
Query: 686 taatcagaatttcttttaacaccctagttaattcaatttctcacataagcatactctcta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7405 taatcagaatttcttttaacaccctagttaattcaatttctcacataagcatactctcta 7346
Query: 746 tcaagaatattgttcaacttaccctcgaactatttcgacaggtcgagcattttatattga 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7345 tcaagaatattgttcaacttaccctcgaactatttcgacaggtcgagcattttatattga 7286
Query: 806 tcaattgattccgataatttgnttgagtgaacaaaaatcccaaccaagagacggacacta 865
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7285 tcaattgattccgataatttgtttgagtgaacaaaaatcccaaccaagagacggacacta 7226
Query: 866 tcttaattaaaactc-atcagcccccttgtccagccaatatttacagttctatgtatctc 924
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7225 tcttaatt-aaactcaatcag-ccccttgtccagccaatatttacagttctatgtatctc 7168
Query: 925 ttttaaagatttaatagttttnctgtaccactattagcacattaaat 971
|||| |||| ||| ||||| |||||||||||| ||||||| ||||
Sbjct: 7167 tttt-aagaattataggtttttctgtaccactataagcacataaaat 7122
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7829
Number of Sequences: 1807
Number of extensions: 7829
Number of successful extensions: 139
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)