BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB02RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1267 1691 0.0
>3x_Contig1267
Length = 5986
Score = 1691 bits (853), Expect = 0.0
Identities = 871/876 (99%), Gaps = 1/876 (0%)
Strand = Plus / Plus
Query: 46 gcttcacctttttcgattcttgttctctgcctggtaagaacccatgatcatcatacctag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 gcttcacctttttcgattcttgttctctgcctggtaagaacccatgatcatcatacctag 3337
Query: 106 cagcagttaagttctcatattcgaaaccatcctcgtaatctgaccattcgtccatattca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 cagcagttaagttctcatattcgaaaccatcctcgtaatctgaccattcgtccatattca 3397
Query: 166 tatcttgagctgcgtattcttccaagatatcacgttcttctgatggcaaaaatttcttgc 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 3398 tatcttgagctgcgtattcttccaagatatcacgttcttctgatggcaaaaattccgtgc 3457
Query: 226 cttcttctgtagacttatttcttctcgctgaggctgccaatttctctattttggagactt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 cttcttctgtagacttatttcttctcgctgaggctgccaatttctctattttggagactt 3517
Query: 286 ggaaatcccccattcctggtatgtgaatgagtctatcaatgttaaagcctgccccacgca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 ggaaatcccccattcctggtatgtgaatgagtctatcaatgttaaagcctgccccacgca 3577
Query: 346 ctataccttgtaccactagatgtcctctgttttcagagctttctatgaaatctatgttgt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 ctataccttgtaccactagatgtcctctgttttcagagctttctatgaaatctatgttgt 3637
Query: 406 cggcgagtaagtatcccctagcatctctccacttgacagtacgaggatacttttgacata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 cggcgagtaagtatcccctagcatctctccacttgacagtacgaggatacttttgacata 3697
Query: 466 atgttctgatggcattgatagcttcggatggtttctccaagttataaacagatttttcgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 atgttctgatggcattgatagcttcggatggtttctccaagttataaacagatttttcgt 3757
Query: 526 tagggaagaaatgtgtaaagtaactctctaatgatttcttaacatctagttggaactttt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 tagggaagaaatgtgtaaagtaactctctaatgatttcttaacatctagttggaactttt 3817
Query: 586 cctttggatgtacttgtgaaagattcgagactacaccgaggtaggaggaaataccttgga 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 cctttggatgtacttgtgaaagattcgagactacaccgaggtaggaggaaataccttgga 3877
Query: 646 attctagagatctaataatttgttcaccgaattcaccatccacctcagatgtaccactta 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 attctagagatctaataatttgttcaccgaattcaccatccacctcagatgtaccactta 3937
Query: 706 acccaaaaacgacgaaatctgccactttagcacagtctaaaatgttgatgaaattggaca 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 acccaaaaacgacgaaatctgccactttagcacagtctaaaatgttgatgaaattggaca 3997
Query: 766 tatctggaataatcacttgaagagtagttttaaacttattgattctgaaattagtgacac 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3998 tatctggaataatcacttgaagagtagttttaaacttattgattctgaaattagtgacac 4057
Query: 826 tcggcatcntcaaatcgaattct-agtcagattctgttttgccgtcattttcggcggata 884
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4058 tcggcatcttcaaatcgaattctaagtcagattctgttttgccgtcattttcggcggata 4117
Query: 885 gtatcaatttctttacgatatcatctgcatatacat 920
||||||||||||| ||||||||||||||||||||||
Sbjct: 4118 gtatcaatttcttaacgatatcatctgcatatacat 4153
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6596
Number of Sequences: 1807
Number of extensions: 6596
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)