BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB04RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 1576 0.0
>3x_Contig1351
Length = 9242
Score = 1576 bits (795), Expect = 0.0
Identities = 833/841 (99%), Gaps = 4/841 (0%)
Strand = Plus / Minus
Query: 58 tattttgggattgtatcttaagcattttaacgtttgcctgtgtttttacttcgataacta 117
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 tattttgggagtgtatcttaagcattttaacgtttgcctgtgtttttacttcgataacta 3546
Query: 118 gaatcaaatatcagttcatatgtctgagggacgaaatgaaggaagtattcccgagtttga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3545 gaatcaaatatcagttcatatgtctgagggacgaaatgaaggaagtattcccgagtttga 3486
Query: 178 tttcacacaattattgcaatcccaagggttagatgagccaggagttgcaacacgcaggga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3485 tttcacacaattattgcaatcccaagggttagatgagccaggagttgcaacacgcaggga 3426
Query: 238 aattcctttggaaaataacatcataccggccagtgtgaaacatcgggaccatcctgtagt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3425 aattcctttggaaaataacatcataccggccagtgtgaaacatcgggaccatcctgtagt 3366
Query: 298 gcatttattgaaaaaagtggatgttgggtctacaatactttgcatcgtaatacctttatt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3365 gcatttattgaaaaaagtggatgttgggtctacaatactttgcatcgtaatacctttatt 3306
Query: 358 ctcgttgttcaaacttatccttgataaaccagagtataatgcggacctcctaaaattgtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3305 ctcgttgttcaaacttatccttgataaaccagagtataatgcggacctcctaaaattgtt 3246
Query: 418 ggtttgttactggtttctgtctgaaatcagtcttatcgcggggtatcataggtttttcac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3245 ggtttgttactggtttctgtctgaaatcagtcttatcgcggggtatcataggtttttcac 3186
Query: 478 ccacagttcctaccaatgtcatatcgctatacaatttacaatggccatcttaggtgcctc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3185 ccacagttcctaccaatgtcatatcgctatacaatttacaatggccatcttaggtgcctc 3126
Query: 538 atgtggattgggatccatccttgatttcaccagtcaacatatggtacatcaccgtcatat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3125 atgtggattgggatccatccttgatttcaccagtcaacatatggtacatcaccgtcatat 3066
Query: 598 tgatactgaaagagacccacattcgcagcatgtttacgggtggttgttctctctttgggg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3065 tgatactgaaagagacccacattcgcagcatgtttacgggtggttgttctctctttgggg 3006
Query: 658 acataggtttttccgcggtaataggaaatcggtgaaagctgtagctaaatgccgagagac 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3005 acataggtttttccgcggtaataggaaatcggtgaaagctgtagctaaatgccgagagac 2946
Query: 718 tattgtgtctactgcaagagcaacatatgataaccacacaacacaattgattagattcag 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2945 tattgtgtctactgcaagagcaacatatgataaccacacaacacaattgattaga-tcag 2887
Query: 778 t-agttatcctttacttctttggcaagatgctaattatttacaactatggattctagcan 836
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2886 taagttatcctttacttctttggcaagatgctaattatttacaactatggattctagcaa 2827
Query: 837 atcttctgntcccctttccttgtaagtaaaatattttctggagctacccccttggaattg 896
|||||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 2826 atcttctgttcccc-ttccttgtaagt-aaatatttcctggagctacccccttggaattg 2769
Query: 897 c 897
|
Sbjct: 2768 c 2768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5395
Number of Sequences: 1807
Number of extensions: 5395
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)