BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB05FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1689 0.0
>3x_Contig1584
Length = 9710
Score = 1689 bits (852), Expect = 0.0
Identities = 867/871 (99%), Gaps = 1/871 (0%)
Strand = Plus / Plus
Query: 86 ccatcacatttatcatcgaatctagcattgctccagcaactgacgcaatctcctcagaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 ccatcacatttatcatcgaatctagcattgctccagcaactgacgcaatctcctcagaga 2817
Query: 146 cccagcaccaagttgccttccaataatggagctgctagcattccaggcggtttcaatcta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 cccagcaccaagttgccttccaataatggagctgctagcattccaggcggtttcaatcta 2877
Query: 206 aaacaactgggtactttcccaacagcgggaatcggcggggttacatacgatttccaagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 aaacaactgggtactttcccaacagcgggaatcggcggggttacatacgatttccaagaa 2937
Query: 266 ctactgggactgaaatcgcctccaaatacttccactaccgagacagtaccaacagtttct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2938 ctactgggactgaaatcgcctccaaatacttccactaccgagacagtaccaacagtttct 2997
Query: 326 cacgataacgatcctctaaaacaggaatctgccgctgaagtgttagccagtcttcagatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2998 cacgataacgatcctctaaaacaggaatctgccgctgaagtgttagccagtcttcagatg 3057
Query: 386 aaacaacaacaaaagacgtcgaatcctttagacagcaataacttggatattggtacccca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3058 aaacaacaacaaaagacgtcgaatcctttagacagcaataacttggatattggtacccca 3117
Query: 446 agcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3118 agcttacccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactg 3177
Query: 506 gatgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3178 gatgattctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtatt 3237
Query: 566 gtaaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3238 gtaaacagcaatgccacaagcatgtccaaatcaaatacacaagaatctcaggcctcaagt 3297
Query: 626 gatacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacaca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3298 gatacggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacaca 3357
Query: 686 aatttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3358 aatttgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgacc 3417
Query: 746 ataactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3418 ataactgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcg 3477
Query: 806 tttgaatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3478 tttgaatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgt 3537
Query: 866 accgagagtggtttggaaagatatgtaacacagcataggtttggagcacttcgattattg 925
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 3538 accgagagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattg 3597
Query: 926 anagaagcagtactttgaaattaacgaatcc 956
| ||||||||||| |||||||||||||||||
Sbjct: 3598 agagaagcagtac-ttgaaattaacgaatcc 3627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5928
Number of Sequences: 1807
Number of extensions: 5928
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)