BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB05RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1616 0.0
>3x_Contig1766
Length = 23951
Score = 1616 bits (815), Expect = 0.0
Identities = 865/878 (98%), Gaps = 3/878 (0%)
Strand = Plus / Minus
Query: 48 tcagtttgaacttgaaac-tttgacattgagtattctattgtcacatttatataaactcg 106
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12432 tcagtttgaacttgaaacggaggacattgagtattctattgtcacatttatataaactcg 12373
Query: 107 ccaacgcagacgaaaaccatgaggtttcatggctgagcattactgaagatctcatcgtgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12372 ccaacgcagacgaaaaccatgaggtttcatggctgagcattactgaagatctcatcgtgg 12313
Query: 167 gaacgtttagactggtgtgtggaccgaattgtttcttgttgaaacaatctcgtaaccgta 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12312 gaacgtttagactggtgtgtggaccgaattgtttcttgttgaaacaatctcgtaaccgta 12253
Query: 227 tggtaacaagaacaaagaaattttgaaaccaatagaaacgattagcgctcttaaaaagga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12252 tggtaacaagaacaaagaaattttgaaaccaatagaaacgattagcgctcttaaaaagga 12193
Query: 287 acgactacgaaaaaacttactgcatcaattcgctctctcaaaccataagtgttttcgtgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12192 acgactacgaaaaaacttactgcatcaattcgctctctcaaaccataagtgttttcgtgg 12133
Query: 347 agaaacctacttagtattattgagaaggagaatttgcaacaccagcgagagagctataat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12132 agaaacctacttagtattattgagaaggagaatttgcaacaccagcgagagagctataat 12073
Query: 407 gtctggcttaaggtggaaagattccttaggatatttccggaattggtaagagcttcggaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12072 gtctggcttaaggtggaaagattccttaggatatttccggaattggtaagagcttcggaa 12013
Query: 467 tttgaaagctgtgcgataaccatatctggaaaagttagtactaagtgaaatctttccatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12012 tttgaaagctgtgcgataaccatatctggaaaagttagtactaagtgaaatctttccatg 11953
Query: 527 ttccattcttcgaaatagcgttctagctgtacaaatacggaatgaggttgtgcttatgaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11952 ttccattcttcgaaatagcgttctagctgtacaaatacggaatgaggttgtgcttatgaa 11893
Query: 587 agaaattccgatgagccacgtcttgtgcaagggcctgtctaagaaagtttactgagtata 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11892 agaaattccgatgagccacgtcttgtgcaagggcctgtctaagaaagtttactgagtata 11833
Query: 647 cttactcgataaggaaagctatgaagaacaatgctaaaagacatttcctggtctacagca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11832 cttactcgataaggaaagctatgaagaacaatgctaaaagacatttcctggtctacagca 11773
Query: 707 acggctgagagcactcaaaaatatccacagcgatagcccggatttaaccatgctgttaat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11772 acggctgagagcactcaaaaatatccacagcgatagcccggatttaaccatgctgttaat 11713
Query: 767 ggtaattatcttcgctgacgggtatctaaaaggaaagcttcgaaatgtctttgtctaaag 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11712 ggtaattatcttcgctgacgggtatctaaaaggaaagcttcgaaatgtctttgtctaaag 11653
Query: 827 atgtcgaaaaaaaaggaaaggtccacaggttttcttactaaaaagaanaatgattcatga 886
||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 11652 atgcgaaaaaaaaaggaaaggtccacagg-tttctaactaaaaagaaaaatgattcatga 11594
Query: 887 tgaagcgacattac-agaagtaatggacggttggtaaa 923
|||||||||| ||| |||||||||||||||| ||||||
Sbjct: 11593 tgaagcgacaatacaagaagtaatggacggtaggtaaa 11556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6653
Number of Sequences: 1807
Number of extensions: 6653
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)