BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB06FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1659 0.0
>3x_Contig917
Length = 3433
Score = 1659 bits (837), Expect = 0.0
Identities = 870/878 (99%), Gaps = 3/878 (0%)
Strand = Plus / Plus
Query: 87 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 tatattatcttaacgatactttgtcaacctaatttgcttggctttgatttaacccattag 2457
Query: 147 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 cttccatttgacatatgatagtgttgatggtgttttaatcaattaaagtctctgttacaa 2517
Query: 207 acgcttatatccgcaattgccaacaataatataaggaaaaggtttatttattctcgattt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 acgcttatatccgcaattgccaacaataatataaggaaaaggtttatttattctcgattt 2577
Query: 267 gatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcgat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 gatacccataagatcaacatctcttttctttccaagacaccatcgtacaaactaagcgat 2637
Query: 327 catctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatgac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 catctttctgtttatattcttgcactgttcttcctttcatattggaaaacctatgatgac 2697
Query: 387 atacaacttaggtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaagaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 atacaacttaggtgatgcaaaaacaaagtataattacaacgataatagtcacgaaaagaa 2757
Query: 447 actgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcgag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 actgatgcggagggattccgtacctctagatgtatttgcatcgatgatgaacgaatcgag 2817
Query: 507 tcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 tcttccctcgacgaatccggcactggagatgtataaactgaccaaaccgtctttgaaatt 2877
Query: 567 tcacttctctacttttgcgtcagtattctctgcgcctgcctgggtccccgatgatggcgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 tcacttctctacttttgcgtcagtattctctgcgcctgcctgggtccccgatgatggcgg 2937
Query: 627 gcctgatatgccttatgatgataaatctcaatatcatcatcatcatcaaaataaccacaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2938 gcctgatatgccttatgatgataaatctcaatatcatcatcatcatcaaaataaccacaa 2997
Query: 687 tcattaccacaatcatcatcacaatcatacggatacatgtgtaggtgctggcaccgatca 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2998 tcattaccacaatcatcatcacaatcatacggatacatgtgtaggtgctggcaccgatca 3057
Query: 747 taacagtgacgaatctgtcgctgcgtccctatgggacccaaactacgaaaaccaatttgg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3058 taacagtgacgaatctgtcgctgcgtccctatgggacccaaactacgaaaaccaatttgg 3117
Query: 807 aaaacgtatggcanaccaatcacattgcctatcctcttaaccaacattaccctcagaaca 866
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3118 -aaacgtatggcaaaccaatcacattgcctatcctcttaaccaacattaccctcagaaca 3176
Query: 867 taccgcagccttcatctcagcgtncgtcgcaaagtagcgagcttcaac-agtcggtacta 925
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 3177 taccgcagccttcatctcagcgtccgtcgcaaagtagcgagcttcaacaagtcggtacta 3236
Query: 926 acattc-actatgttatncaccttaacgcactcatacg 962
|||||| ||||||| || ||||| ||||||||||||||
Sbjct: 3237 acattcaactatgtcatccacctaaacgcactcatacg 3274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6891
Number of Sequences: 1807
Number of extensions: 6891
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)