BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB06RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1709 0.0
>3x_Contig1768
Length = 25668
Score = 1709 bits (862), Expect = 0.0
Identities = 894/904 (98%), Gaps = 1/904 (0%)
Strand = Plus / Minus
Query: 43 cttcttttttttccagttaccatttgaatcatatcattatgattctgcgaatagtatgta 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3842 cttcttttttttccagttaccaaatgaatcatatcattatgattctgcgaatagtatgta 3783
Query: 103 ttttaggatatcgcttagagtgagaacaccagttaggaatccgttcgaatcgacgacgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3782 ttttaggatatcgcttagagtgagaacaccagttaggaatccgttcgaatcgacgacgaa 3723
Query: 163 aaatctatgtacacgagattttctcactgtatcaagaatggaggagagtttatcgttttc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3722 aaatctatgtacacgagattttctcactgtatcaagaatggaggagagtttatcgttttc 3663
Query: 223 agtacatgtgaagacaccttcgaaatcatcacttcttctcatcagagcttccccaacgga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3662 agtacatgtgaagacaccttcgaaatcatcacttcttctcatcagagcttccccaacgga 3603
Query: 283 tagggaaagatcgttgtatatgcctcccttaatgagacctaggacatcaacggcttcgta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602 tagggaaagatcgttgtatatgcctcccttaatgagacctaggacatcaacggcttcgta 3543
Query: 343 gacgttgaccaatttaccttgctcatcgacaattggaacactggaaacgcctccagccag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 gacgttgaccaatttaccttgctcatcgacaattggaacactggaaacgcctccagccag 3483
Query: 403 agttaaaagttgaatgacatctattactggcgtgctcatttgacaactcatgatgttatt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3482 agttaaaagttgaatgacatctattactggcgtgctcatttgacaactcatgatgttatt 3423
Query: 463 tgtcgatataatgtccaactcacgtagaggcctctttagatagcggatttccttgcagtt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3422 tgtcgatataatgtccaactcacgtagaggcctctttagatagcggatttccttgcagtt 3363
Query: 523 caatgccacaaattttaggatacggtattgtgttaacacactcacgacaatttctctttg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3362 caatgccacaaattttaggatacggtattgtgttaacacactcacgacaatttctctttg 3303
Query: 583 agtctcttcatcttgatcaatcaaagggatcctcctggaccgggattctatcatcttcac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302 agtctcttcatcttgatcaatcaaagggatcctcctggaccgggattctatcatcttcac 3243
Query: 643 acatgcttcatacaacggtctgaatggatgaattgatcttgtatcgtaaggctggatgcc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3242 acatgcttcatacaacggtctgaatggatgaattgatcttgtatcgtaaggctggatgcc 3183
Query: 703 aatggccctttcaatatctttgagtccgttcaattgtagtttatccaccagttcaaactt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3182 aatggccctttcaatatctttgagtccgttcaattgtagtttatccaccagttcaaactt 3123
Query: 763 atccgggttgtggaaataatattgaatcacattgatgaagtctgaacttgtcaatanacc 822
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3122 atccgggttgtggaaataatattgaatcacattgatgaagtctgaacttgtcaataaacc 3063
Query: 823 tgncaatttggaagtttgagcatcccacaagggagcagaaacaacattgttttgtaacag 882
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 tgcaaatttggaagtttgagcatcccacaagggagcagaaacaacattgttttgtaacag 3003
Query: 883 gatatttaacgattttttcactagttaagaagtgtcc-acacattcaatttatttgaaac 941
||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| ||||||
Sbjct: 3002 gatatttaacgattttttcactagtaaagaagtgtccaacacaatcaatctatatgaaac 2943
Query: 942 tggt 945
||||
Sbjct: 2942 tggt 2939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7052
Number of Sequences: 1807
Number of extensions: 7052
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)