BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC15ZB07FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1507 0.0
>3x_Contig1383
Length = 6139
Score = 1507 bits (760), Expect = 0.0
Identities = 823/836 (98%), Gaps = 6/836 (0%)
Strand = Plus / Plus
Query: 87 ctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaactaatgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 ctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaactaatgt 2251
Query: 147 tgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccggcaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 tgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccggcaac 2311
Query: 207 aggtaaagttatgattgaactattacttgacggtgaagctaaatccgctgatattagtgc 266
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 aggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatattagtgc 2371
Query: 267 attggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattgcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 attggatcccagcttatactttgatgcatctatctttgaataaaatgaatccattgcaaa 2431
Query: 327 gtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacatcaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 gtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaacatcaat 2491
Query: 387 cgatttctaacctctttaataatttaattactgccatcattatcccgttaaatatttttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 cgatttctaacctctttaataatttaattactgccatcattatcccgttaaatatttttc 2551
Query: 447 tatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcattata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 tatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatcattata 2611
Query: 507 tactgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaagtttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612 tactgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaagtttg 2671
Query: 567 aatggaaactccatattttcatttattcatattcttgaaagcagctctcgctccatttgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2672 aatggaaactccatattttcatttattcatattcttgaaagcagctctcgctccatttgc 2731
Query: 627 agcatccgtattgcttcttttctgtttgttcagagtgtacagtacctctgctctactact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2732 agcatccgtattgcttcttttctgtttgttcagagtgtacagtacctctgctctactact 2791
Query: 687 tgaaacaaacatattatcttgcggtgactttcgtggctttgatgaagtggaacaagtttc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2792 tgaaacaaacatattatcttgcggtgactttcgtggctttgatgaagtggaacaagtttc 2851
Query: 747 aggcggtttcaaacttaag-tatcaactttcttggtc-atttctcagactccaa-gcggc 803
||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 2852 aggcggtttcaaacttaagttatcaactttcttggtcaatttctcagactccaaggcggc 2911
Query: 804 cttagtcttg-ataagctatcaaccc-tttttgccctgaaataatcacgaaatcactcgg 861
|||||||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct: 2912 cttagtcttgaataagctatcaacccatttttgccttgaattaatcacgaaatcactcgg 2971
Query: 862 agcactttttgttattgcaattcaccatacccttagatttgaacttctcgaatatt 917
||||||||||| || |||||| |||||| ||||||||||||||||||||||||||
Sbjct: 2972 agcactttttggtaatgcaatcaaccata-ccttagatttgaacttctcgaatatt 3026
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7747
Number of Sequences: 1807
Number of extensions: 7747
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)